BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZA02RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1587 1598 0.0
>3x_Contig1587
Length = 10277
Score = 1598 bits (806), Expect = 0.0
Identities = 865/878 (98%), Gaps = 5/878 (0%)
Strand = Plus / Plus
Query: 42 gcttgacctctcctcgtgactatt-atacattaatcgtacaggcatatcacttcgccgcc 100
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1328 gcttgacctctcctcgtgactaaacatacattaatcgtacaggcatatcacttcgccgcc 1387
Query: 101 tcgattccacactaagatgcagcattttccaaatgaattctaatgtgtcattaagaaaca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 tcgattccacactaagatgcagcattttccaaatgaattctaatgtgtcattaagaaaca 1447
Query: 161 ctgctttcgaatctgctaaatgtaaacagagatgccagttcatgtccatttttttttt-t 219
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 1448 ctgctttcgaatctgctaaatgtaaacagagatgccagttcatgtccattttctttcaat 1507
Query: 220 ccgtttttttttttttttttttttgggcattcattttcaaaatttcacctgtttttctca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1508 ccgtttttttttttttttttttttgggcattcattttcaaaatttcacctgtttttctca 1567
Query: 280 gtggacgctgcaggagaaaacggagaaaacaggacttgcaaatttagggttttgagtcga 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1568 gtggacgctgcaggagaaaacggagaaaacaggacttgcaaatttagggttttgagtcga 1627
Query: 340 gcatatggaacgtgtaaaacggtcaccaaaacttattgcaacaaacctcagaagaagctg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1628 gcatatggaacgtgtaaaacggtcaccaaaacttattgcaacaaacctcagaagaagctg 1687
Query: 400 acttcctaacaaggactgccgagaaatatattagacaaatttcagagaagggcggatgat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1688 acttcctaacaaggactgccgagaaatatattagacaaatttcagagaagggcggatgat 1747
Query: 460 ttaggaatgcctcgggacaattaggaattgaggaagcaaaatacacaatagaaaaaaaga 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1748 ttaggaatgcctcgggacaattaggaattgaggaagcaaaatacacaatagaaaaaaaga 1807
Query: 520 aatactataaacatggccctcaactgggacagttaataaaacattggaacaagtcacgtt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1808 aatactataaacatggccctcaactgggacagttaataaaacattggaacaagtcacgtt 1867
Query: 580 cagatgagataagaacatcattcaaatgcaagtcaagacagtaagctccagctcgacttt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1868 cagatgagataagaacatcattcaaatgcaagtcaagacagtaagctccagctcgacttt 1927
Query: 640 agaatggatataagcctaacgaaacacacctactagcaatggcacggctgagtgccgggt 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1928 agaatggatataagcctaacgaaacacacctactagcaatggcacggctgagtgccgggt 1987
Query: 700 aatggtacatagcgtcagttccctttcatgtaacatatatatccttttattttcgtttcg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1988 aatggtacatagcgtcagttccctttcatgtaacatatatatccttttattttcgtttcg 2047
Query: 760 ttttaatacagcgtggccttggccatacatggaatatgtatatattggagtatatacacc 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2048 ttttaatacagcgtggccttggccatacatggaatatgtatatattggagtatatacacc 2107
Query: 820 ttcgcttccc-ataaagattatatggggaggagtgttttatgaggggttttttgttcaat 878
| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 2108 tccgcttcccaataaagattatatggggagaagtgtttaatgaggggttttttgttcaat 2167
Query: 879 gctttggatggcctt-aacctctttata-cagccagga 914
||||||||||||||| |||||||||||| |||||||||
Sbjct: 2168 gctttggatggccttgaacctctttataccagccagga 2205
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,608
Number of Sequences: 1807
Number of extensions: 26608
Number of successful extensions: 4543
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)