BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZA06FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig842 1580 0.0
>3x_Contig842
Length = 3899
Score = 1580 bits (797), Expect = 0.0
Identities = 858/869 (98%), Gaps = 7/869 (0%)
Strand = Plus / Minus
Query: 84 tgaaggatcactttttggcccataatacacatcaggagtggaaaaaggatccactacttc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1791 tgaaggatcactttttggcccataatacacatcaggagtggaaaaaggatccactacttc 1732
Query: 144 ttctaatgaagaagttcttctatgtctagaacgtggtgggttattatttactttgccatc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 ttctaatgaagaagttcttctatgtctagaacgtggtgggttattatttactttgccatc 1672
Query: 204 cattatgtatgatttattgcactgccaggataaagcgtgtcgctgacgcccgtatattat 263
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1671 cattatgtatgatctattgcactgccaggataaagcgtgtc-ctgacgcccgtatattat 1613
Query: 264 actgaaaagatatccagttttccctatattatctttagggattaaatgatatcaatcctt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 actgaaaagatatccagttttccctatattatctttagggattaaatgatatcaatcctt 1553
Query: 324 cgctaaagggtaccttcaacgtttgtgcaattagtaaaatatattattcagttgcgattc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 cgctaaagggtaccttcaacgtttgtgcaattagtaaaatatattattcagttgcgattc 1493
Query: 384 acacagaatgcttatgaatagattgctagtttctgtcctaatgcactcaagtgaaacaga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 acacagaatgcttatgaatagattgctagtttctgtcctaatgcactcaagtgaaacaga 1433
Query: 444 agctctgacttggacacttcactgtttgaagataaaactaagtgaggaaggtccgtgtat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 agctctgacttggacacttcactgtttgaagataaaactaagtgaggaaggtccgtgtat 1373
Query: 504 atatacacaataccttgaatcggataaataacaaggtagacgtttctttaattgtccttt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 atatacacaataccttgaatcggataaataacaaggtagacgtttctttaattgtccttt 1313
Query: 564 ccctttttttttttctttctatgctttatgaagcttttcttttcatctctttccttttga 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 ccctttttttttttctttctatgctttatgaagcttttcttttcatctctttccttttga 1253
Query: 624 tcctttccaatatacaggaatcctctcttcttgtttctttataattacggataaacttcg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 tcctttccaatatacaggaatcctctcttcttgtttctttataattacggataaacttcg 1193
Query: 684 acatcaccgctacgcaggtttctgcagagttcggatgatctgcggacttttgcaatgcaa 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 acatcaccgctacgcaggtttctgcagagttcggatgatctgcggacttttgcaatgcaa 1133
Query: 744 cacctgatgagtatcgagtagccaagacgtagtcaattgacaacggggataccaaacaga 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 cacctgatgagtatcgagtagccaagacgtagtcaattgacaacggggataccaaacaga 1073
Query: 804 tccccaggtatcctgctggtaaatacttttcgatgcacaaattttaaacttgttagatgt 863
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1072 tccccaggtatcctgctggtaattacttttcgatgcacaaattttaaacttgttagatg- 1014
Query: 864 tggtattgattcttacacatttttatcacccgaacggttctttttgataatccgagcttt 923
||||||||||||| ||||| |||||||| ||| ||||||| |||||||||| ||||||||
Sbjct: 1013 tggtattgattctcacaca-ttttatca-ccggacggttc-ttttgataat-cgagcttt 958
Query: 924 gtcctttcgtttagaaattgaaacagctg 952
| |||||||||||||||||||||||||||
Sbjct: 957 g-cctttcgtttagaaattgaaacagctg 930
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,176
Number of Sequences: 1807
Number of extensions: 13176
Number of successful extensions: 142
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)