BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZA06RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 1275 0.0
>3x_Contig787
Length = 1880
Score = 1275 bits (643), Expect = 0.0
Identities = 786/822 (95%), Gaps = 10/822 (1%)
Strand = Plus / Minus
Query: 52 tagtcgaagttaaaccattgt-agtcattctttgtcgaaatcaccataatcatcgtaaaa 110
|||||||||||||||||| | |||||||||| |||| ||||| ||||||||||||||||
Sbjct: 820 tagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcgtaaaa 761
Query: 111 gcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagtca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggtagtca 701
Query: 171 aataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttatgggagg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 700 aataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttaggggagg 641
Query: 231 gatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtgggt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtgtgggt 581
Query: 291 gtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtgtg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgtgtgtg 521
Query: 351 ggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaaccttttc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaaccttttc 461
Query: 411 caattgatcatcacttggcttacaagaaatagaattggccgtggaacctgtcatagcagc 470
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 460 caattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcatagcagc 401
Query: 471 aacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaatc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggataaatc 341
Query: 531 tctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactggaacc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactggaacc 281
Query: 591 agtcaagatagccataactttagagtaatccttgcttgttactttacctgcggagtttca 650
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||
Sbjct: 280 agtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggagttcca 221
Query: 651 ttctattgagtacaaatcagccaaatcggtttcgataacgaccgaagcggcagaagccaa 710
||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 220 ttcgattgggtacaaatcagccaaatcgttttcgataacgaccgaagcggcagaagccaa 161
Query: 711 gttacctaattgatatgcaagaccagaggaccacagctctagctttctggaggagataac 770
||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct: 160 gttacctaattgataggcaagaccaga-gaccaaagctctagc-ttctggaggagataa- 104
Query: 771 ttccgaaagattggtttgaaaagactaccccataccccaagaaatggatgaaccaaagca 830
||| ||||||| | || | |||| |||||| || ||||| |||||| |||||||||||
Sbjct: 103 ttcggaaagatggattgg--aagaacaccccagacaccaag-aatgga-gaaccaaagca 48
Query: 831 tgtaaccctgcacccaacatcacagaaacttgtcttcaacat 872
|| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 47 tg-aaccctgcacccaacacagcag-aacttgtcttcaacat 8
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8043
Number of Sequences: 1807
Number of extensions: 8043
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)