BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC18ZA07RM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig787                                                         1467   0.0  

>3x_Contig787 
          Length = 1880

 Score = 1467 bits (740), Expect = 0.0
 Identities = 786/800 (98%), Gaps = 1/800 (0%)
 Strand = Plus / Minus

                                                                       
Query: 59  tagtcattcttcgtcgaaatcaccataatcatcgtaaaagcatcatttcaaatgttgtgg 118
           |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 799 tagtcattcttcgtcgtaatcatcataatcatcgtaaaagcatcatttcaaatgttgtgg 740

                                                                       
Query: 119 aatattaattgtgaaatggggagaggggatgggtagtcaaataataaaggttttaaaagg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatattaattgtgaaatggggagaggggatgggtagtcaaataataaaggttttaaaagg 680

                                                                       
Query: 179 aaacaaaaattaaagtttttcgtatgagtttaggggagggatggtacatcttgtttgttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaacaaaaattaaagtttttcgtatgagtttaggggagggatggtacatcttgtttgttt 620

                                                                       
Query: 239 gtctctatcttatctctataaagtgcacatgagtgtgggtgtagtcatttaatttaatgt 298
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtctctatctca-ctctataaagtgcacatgagtgtgggtgtagtcatttaatttaatgt 561

                                                                       
Query: 299 tttccttttttcctttttataatgctatggtgcgtgtgtgggcatgaaattgtataaagg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttccttttttcctttttataatgctatggtgcgtgtgtgggcatgaaattgtataaagg 501

                                                                       
Query: 359 tttagtttctgttaatcattaatcaaactgaaaccttttccaattgatcatcacttggct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttagtttctgttaatcattaatcaaactgaaaccttttccaattgatcatcacttggct 441

                                                                       
Query: 419 tagaagaaatagaattggccgtggaacctgtcatagcagcaacttcttccgtttggtcaa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagaagaaatagaattggccgtggaacctgtcatagcagcaacttcttccgtttggtcaa 381

                                                                       
Query: 479 ctctttcgatataagatttcaaatgaggagaggataaatctctgtggaacttctcgtgac 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctctttcgatataagatttcaaatgaggagaggataaatctctgtggaacttctcgtgac 321

                                                                       
Query: 539 cgacaaataccaagacaaaagtgaagatgacactggaaccagtcaagatagccataactt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cgacaaataccaagacaaaagtgaagatgacactggaaccagtcaagatagccataactt 261

                                                                       
Query: 599 tagagtaatccttgtttgttacttcacctgcggagttccattcgattgggtacaaatcag 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tagagtaatccttgtttgttacttcacctgcggagttccattcgattgggtacaaatcag 201

                                                                       
Query: 659 ccaaatcgttttcgataacgaccgaagcggcagaagccaagttacctaattgataggcaa 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ccaaatcgttttcgataacgaccgaagcggcagaagccaagttacctaattgataggcaa 141

                                                                       
Query: 719 gaccagagaccaaagctctagcttctggaggagataattctgaaagatggattggaagaa 778
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 140 gaccagagaccaaagctctagcttctggaggagataattcggaaagatggattggaagaa 81

                                                                       
Query: 779 caccccagacaccaagaatggagtacccaagcatgaaccctgcacccaacactacatgac 838
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||  ||  ||
Sbjct: 80  caccccagacaccaagaatggagaaccaaagcatgaaccctgcacccaacacagcagaac 21

                               
Query: 839 ttgtccttcacatgaaagct 858
           ||||| |  |||||||||||
Sbjct: 20  ttgtcttcaacatgaaagct 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7394
Number of Sequences: 1807
Number of extensions: 7394
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)