BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZA08FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1052 1516 0.0
>3x_Contig1052
Length = 4051
Score = 1516 bits (765), Expect = 0.0
Identities = 848/869 (97%), Gaps = 6/869 (0%)
Strand = Plus / Plus
Query: 86 cctccggatattgtccagacaatattaccttatttaacctcaaaggatattaagaatcta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 cctccggatattgtccagacaatattaccttatttaacctcaaaggatattaagaatcta 964
Query: 146 tctctcaccaataaatacttcaacaagttgctagattactctaactcttctattctatgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 tctctcaccaataaatacttcaacaagttgctagattactctaactcttctattctatgg 1024
Query: 206 catgaactcttctttatttcattcgggaatacttatacgaatgatgagcctttcatctcg 265
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 catgaactcttcaggaagtcattcgggaatacttatacgaatgatgagcctttcatctcg 1084
Query: 266 aagaattcaaagaggtttcaaacctgcagcgaaacgatattgttgaatactcacccaggc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 aagaattcaaagaggtttcaaacctgcagcgaaacgatattgttgaatactcacccaggc 1144
Query: 326 attgaatgggacaagttgtacaatctcagaaaatatcggagcgcagtattcacttgggga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 attgaatgggacaagttgtacaatctcagaaaatatcggagcgcagtattcacttgggga 1204
Query: 386 tgcataaagcacggaagacttggttacacaattagctctaatagtagactttctgcagat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 tgcataaagcacggaagacttggttacacaattagctctaatagtagactttctgcagat 1264
Query: 446 tccatgaatcagctggatagaagaattacattcggagtttgtaaacccgttgaagttcct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 tccatgaatcagctggatagaagaattacattcggagtttgtaaacccgttgaagttcct 1324
Query: 506 tggatgctttattctgtaccaatatctggtagagctaatagctgggatgatgacgatact 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 tggatgctttattctgtaccaatatctggtagagctaatagctgggatgatgacgatact 1384
Query: 566 gaggaagaaacaaacatattaggtgaatatgacagatcaattgttcaaatatcaggaggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 gaggaagaaacaaacatattaggtgaatatgacagatcaattgttcaaatatcaggaggt 1444
Query: 626 ggtttttccttccagatcttgacccagtcaggaaagctatattcaacaggggccacatac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 ggtttttccttccagatcttgacccagtcaggaaagctatattcaacaggggccacatac 1504
Query: 686 catggcggacataatggacctggtccacttgctggagaacacgattttcaaccaatcgat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 catggcggacataatggacctggtccacttgctggagaacacgattttcaaccaatcgat 1564
Query: 746 gaaacgatccgttctttagaaag-agttttccattagtgcatggaccttncagagtcatg 804
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 1565 gaaacgatccgttctttagaaagaagttttccattagtgcatggacctttcagagtcatg 1624
Query: 805 ggcttcattggtgatccaataagaa-tcaaaat-cacaccatacgacanac-taacggga 861
|||| |||||||||||||||||||| ||||||| |||||||||||||| || ||||||||
Sbjct: 1625 ggctccattggtgatccaataagaattcaaaatccacaccatacgacaaacttaacggga 1684
Query: 862 acttttc-acagcatgaagatat-tatgcaaatcttattgaacttagtgatattagcttc 919
||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 1685 acttttcaacagcatgaagatatatatgcagatcttatgaaacttagtgatattagctcg 1744
Query: 920 naatgtttaccangaaatgatcaagtgag 948
||||||||||| ||||||||||||||||
Sbjct: 1745 aaatgtttaccaggaaatgatcaagtgag 1773
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6584
Number of Sequences: 1807
Number of extensions: 6584
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)