BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZA08RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1764 999 0.0
>3x_Contig1764
Length = 22510
Score = 999 bits (504), Expect = 0.0
Identities = 656/700 (93%), Gaps = 5/700 (0%)
Strand = Plus / Plus
Query: 45 cttattttcctat-atcttttttaaa-ta-attttagatcgaagagtacgcactcatttt 101
||||||||||||| |||||||| ||| || ||||| ||||| |||||||||||||||||
Sbjct: 15418 cttattttcctatcatctttttgaaaatatatttttgatcgctgagtacgcactcatttt 15477
Query: 102 atacaattaatcctcagcatctgctttttcctttattgctttgaattatacggtgttaac 161
| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 15478 ttttaattaatcctcagcatctgctttttcctttattgctttgaattatttggtgttttc 15537
Query: 162 tcttttattgattacacaaccgaattatgcaattgtacactagtattacgtttttgtttt 221
|||||||||| || |||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct: 15538 tcttttattgttttcacaaccgtattatgcaattgtacactagtattacgttctggtttt 15597
Query: 222 cagagattagtttctcttaaaaggtccaaacctaaaactcatttttatccaatattttat 281
|||||||| |||||||||| |||||| |||||| |||||||||||| |||||||||||||
Sbjct: 15598 cagagatttgtttctcttagaaggtcgaaacctgaaactcatttttttccaatattttat 15657
Query: 282 tatattcaccccgattgacatttgcttgtgtattctgatggaataatgctgatcattacc 341
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 15658 tatattcaccccgattgacatttgcttgtgtattctgatggaataatgttgatcattacc 15717
Query: 342 attccgagaatattcatgatagaaaatggttttcatcctatttcatccataactgaaact 401
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 15718 attccgagaatattcatgatagaaaatggtttttatcctatttcatccataactgaaact 15777
Query: 402 tatttcacatcaaactcattttagttactattatttatcatggatttgaattcattcaac 461
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 15778 tatttcacatcaaactcatttttgttactattatttatcatggatttgaattcattcaac 15837
Query: 462 tttataatattgttataacgcataactatagagtgatacgtttgtgtttcgctgtcgctt 521
||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 15838 ttttttttattgttttaacgcataactatagagtgatacgtttgtgtttcgttgtcgctt 15897
Query: 522 gtaatcacttggtattcattaatattctatctaaccaaaactatactttcccgttttcga 581
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 15898 gtaatcacttggtattcattaatattctttcttaccaaaactatactttcccgttttcga 15957
Query: 582 caacgacacacaatgctctatgaatggattatattgtattatgtgtcaatttttccgctt 641
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 15958 caacgacacacaaggctctatgaatggattatattgtattttgtgtcaatttttccgttt 16017
Query: 642 tccctttataaa-tgtatatgcaagcaatggtagaattgtatactagatcatgtttatag 700
| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 16018 ttcctttttaaattgtatatgcaagcaatggtagaattgtataatagatcatgtttatag 16077
Query: 701 ataacacactgaataaggcattactaanttataacttttt 740
|||| |||||||||||||| ||||||| ||||||||||||
Sbjct: 16078 ataaaacactgaataaggctttactaa-ttataacttttt 16116
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8406
Number of Sequences: 1807
Number of extensions: 8406
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)