BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZA09RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1427 0.0
>3x_Contig1645
Length = 12736
Score = 1427 bits (720), Expect = 0.0
Identities = 814/840 (96%), Gaps = 4/840 (0%)
Strand = Plus / Plus
Query: 46 ctctccaagc-gagatcatttgtcaacttcgcattctctactctcacgttttctatctct 104
|||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 11657 ctctccaagcagagatcattcttcaacttcgcattctctactctcaagttttctatctct 11716
Query: 105 tcc-ggagagattcattggatctttccgtttctgtcatatctccgtacggtctctagtac 163
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11717 tccaggagagattcattggatctttccgtttctgtcatatctccgtacggtctctagtac 11776
Query: 164 agttctgctggacttcgaaatttagacaagtgttgcaggcatcatattggcaggtataat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11777 agttctgctggacttcgaaatttagacaagtgttgcaggcatcatattggcaggtataat 11836
Query: 224 cagtgctcgttaaaaggatgccttcgtgtgaacttgaatttgatttttcttttcttttgt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11837 cagtgctcgttaaaaggatgccttcgtgtgaacttgaatttgatttttcttttcttttgt 11896
Query: 284 aaatcatagtgtcagtttatgtaatggtaagagctgcattgactttttaactcaaacaca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897 aaatcatagtgtcagtttatgtaatggtaagagctgcattgactttttaactcaaacaca 11956
Query: 344 cggaaaagcaacccactagccgccaagtttgatcatttaagcccaatagtatttaccttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11957 cggaaaagcaacccactagccgccaagtttgatcatttaagcccaatagtatttaccttt 12016
Query: 404 caaaatatctcatgcgacaggtcattatgatgtttatgaataagtgtgtaattatctatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12017 caaaatatctcatgcgacaggtcattatgatgtttatgaataagtgtgtaattatctatt 12076
Query: 464 tacgtctgtttctgcttaataaataaagtttttaagtagcgaagttgaaagaaacaggta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12077 tacgtctgtttctgcttaataaataaagtttttaagtagcgaagttgaaagaaacaggta 12136
Query: 524 acaacgagcacaacagttaacagaattgaccaatatgttacactttcattagtcacctca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12137 acaacgagcacaacagttaacagaattgaccaatatgttacactttcattagtcacctca 12196
Query: 584 gtcatttcacgaaacacagcttctttctttttgatgtcatcttgttcgttctttatactc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12197 gtcatttcacgaaacacagcttctttctttttgatgtcatcttgttcgttctttatactc 12256
Query: 644 aatagcctttcattcaattgatatattctgtcttttagagacaccattgcagagtttctc 703
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 12257 aatagcctttcattcaattgatatattctgtctttaagagacaccattgcagagtttctc 12316
Query: 704 ctactttgcaatgaaattgcactaccgatttctatcgcatggtatgctttgatacgtctg 763
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 12317 ctactttgcaatgaaattgcactaccgatatctatcgcatggtatagcttgatacgtctg 12376
Query: 764 gtactatcagggtagtatggttcttaac-aattttatgcttcctctttttctactgccct 822
|||||||||||||||||||||||| ||| |||||||||| || ||||||||||||| ||
Sbjct: 12377 gtactatcagggtagtatggttctaaacaaattttatgc-tctcctttttctactgcact 12435
Query: 823 gaattaaaaaggtccttttgccaccgttttctgaccctagaaccaatggttgttaacaaa 882
|||| |||||||||||| || ||||| ||||||| || ||| | |||||||||| ||||
Sbjct: 12436 gaatgaaaaaggtccttgtggcaccgctttctgagccaagacacgatggttgttatcaaa 12495
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7908
Number of Sequences: 1807
Number of extensions: 7908
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)