BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC18ZA10FM1.SCF screened BAC_end
         (977 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1666                                                        1090   0.0  

>3x_Contig1666 
          Length = 16162

 Score = 1090 bits (550), Expect = 0.0
 Identities = 608/626 (97%), Gaps = 1/626 (0%)
 Strand = Plus / Minus

                                                                        
Query: 84   caagcatagttgaaaagatgaagaacgattcagccggcatttaccataggaaatcgataa 143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7761 caagcatagttgaaaagatgaagaacgattcagccggcatttaccataggaaatcgataa 7702

                                                                        
Query: 144  gttatctatatagtaagaaaggtgtacaccgggaaaacctgcataaccacacaacagcct 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7701 gttatctatatagtaagaaaggtgtacaccgggaaaacctgcataaccacacaacagcct 7642

                                                                        
Query: 204  actaataatacaacttttatttaataatgcttacaagagttacaagaagttttgcggcta 263
            ||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7641 actaataatacaacggctagttaataatgcttacaagagttacaagaagttttgcggcta 7582

                                                                        
Query: 264  tgagcccaagatcatttcggatttgtactagactacaatcaacccaagcacagcaaccac 323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7581 tgagcccaagatcatttcggatttgtactagactacaatcaacccaagcacagcaaccac 7522

                                                                        
Query: 324  aacaacaggaaaactcagaaattgagcttttaaatgaacttaaatcataaatggacaaat 383
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7521 aacaacaggaaaactcagaaattgagcttttaaatgaacttaaatcagaaatggacaaat 7462

                                                                        
Query: 384  tgggaccattatctgatgccgaaagtgccgaactcagtgctttatttgacagtcaaagtc 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7461 tgggaccattatctgatgccgaaagtgccgaactcagtgctttatttgacagtcaaagtc 7402

                                                                        
Query: 444  cttttacagtattcccaaaacttgaagacgtaagccccgaggaagtattgggagccgctc 503
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7401 cttttacagtattcccaaaacttgaagacgtaagccccgaggaagtagtgggagccgctc 7342

                                                                        
Query: 504  catttgggaagaaaacatatttcattcaaagaagttttaacggaaatttacctgtgtaca 563
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7341 catttgggaagaaaacatatttcattcaaagaagtattaacggaaatttacctgtgtaca 7282

                                                                        
Query: 564  ctgactacataaacagcaataagattgtcacctaaatcataaagattcaaggtgatcctg 623
            ||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct: 7281 ctgactacaaaaacagcaataagattgtcaccgaaatcagaaagattcaaggggatcctg 7222

                                                                        
Query: 624  tgcagctaagaaactatctacaagaaaggccttcctttcattccaaaaaagtaccggaag 683
            |||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct: 7221 tgcagctaagaaacgatctacaagaaagg-cttcctttcattccaaagaagtactggaag 7163

                                      
Query: 684  gtgatactttaattcaataaaattat 709
            ||||||||| |||  |||||||||||
Sbjct: 7162 gtgatacttcaatcaaataaaattat 7137


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6996
Number of Sequences: 1807
Number of extensions: 6996
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)