BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB02FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig917 1598 0.0
>3x_Contig917
Length = 3433
Score = 1598 bits (806), Expect = 0.0
Identities = 847/857 (98%), Gaps = 3/857 (0%)
Strand = Plus / Plus
Query: 86 tatattatcttaacgatactttgtcaacctaatttgcttggctttgatttaacccattag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2398 tatattatcttaacgatactttgtcaacctaatttgcttggctttgatttaacccattag 2457
Query: 146 cttccatttgacatatgatagtgttgatggtgttttaatcaattaaagtctctgttacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 cttccatttgacatatgatagtgttgatggtgttttaatcaattaaagtctctgttacaa 2517
Query: 206 acgcttatattctgtaattgccaacaataatataaggaaaaggtttatttattctcgatt 265
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2518 acgcttatatcc-gcaattgccaacaataatataaggaaaaggtttatttattctcgatt 2576
Query: 266 tgatacccataagatcaacatctcttttctttccaagacaccatcgtacaaactaagcga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2577 tgatacccataagatcaacatctcttttctttccaagacaccatcgtacaaactaagcga 2636
Query: 326 tcatctttctgtttatattcttgcactgttcttcctttcatattggaaaacctatgatga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2637 tcatctttctgtttatattcttgcactgttcttcctttcatattggaaaacctatgatga 2696
Query: 386 catacaacttaggtgatgcaaaaacaaagtataattacaacgataatagtcacgaaaaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2697 catacaacttaggtgatgcaaaaacaaagtataattacaacgataatagtcacgaaaaga 2756
Query: 446 aactgatgcggagggattccgtacctctagatgtatttgcatcgatgatgaacgaatcga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2757 aactgatgcggagggattccgtacctctagatgtatttgcatcgatgatgaacgaatcga 2816
Query: 506 gtcttccctcgacgaatccggcactggagatgtataaactgaccaaaccgtctttgaaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2817 gtcttccctcgacgaatccggcactggagatgtataaactgaccaaaccgtctttgaaat 2876
Query: 566 ttcacttctctacttttgcgtcagtattctctgcgcctgcctgggtccccgatgatggcg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2877 ttcacttctctacttttgcgtcagtattctctgcgcctgcctgggtccccgatgatggcg 2936
Query: 626 ggcctgatatgccttatgatgataaatctcaatatcatcatcatcatcaaaataaccaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2937 ggcctgatatgccttatgatgataaatctcaatatcatcatcatcatcaaaataaccaca 2996
Query: 686 atcattaccacaatcatcatcacaatcatacggatacatgtgtaggtgctggcaccgatc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2997 atcattaccacaatcatcatcacaatcatacggatacatgtgtaggtgctggcaccgatc 3056
Query: 746 ataacagtgacgaatctgtcgctgcgtccctatgggacccaaactacgaaaaccaatttg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3057 ataacagtgacgaatctgtcgctgcgtccctatgggacccaaactacgaaaaccaatttg 3116
Query: 806 gaaacgtatggcanaccaatcacattgcctatcctcttaaccaacattaccttcag-aca 864
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 3117 gaaacgtatggcaaaccaatcacattgcctatcctcttaaccaacattaccctcagaaca 3176
Query: 865 taccgcagccttcatctcagcgtccgtcgcaaagtagcgagctttcacaagtcggtactt 924
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3177 taccgcagccttcatctcagcgtccgtcgcaaagtagcgagcttcaacaagtcggtacta 3236
Query: 925 acattc-actatgtcat 940
|||||| ||||||||||
Sbjct: 3237 acattcaactatgtcat 3253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6967
Number of Sequences: 1807
Number of extensions: 6967
Number of successful extensions: 223
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)