BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB02RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1687 0.0
>3x_Contig1768
Length = 25668
Score = 1687 bits (851), Expect = 0.0
Identities = 877/883 (99%), Gaps = 2/883 (0%)
Strand = Plus / Minus
Query: 40 gcttcttttttttccagttaccatttgaatcatatcattatgattctgcgaatagtatgt 99
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3843 gcttcttttttttccagttaccaaatgaatcatatcattatgattctgcgaatagtatgt 3784
Query: 100 attttaggatatcgcttagagtgagaacaccagttaggaatccgttcgaatcgacgacga 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3783 attttaggatatcgcttagagtgagaacaccagttaggaatccgttcgaatcgacgacga 3724
Query: 160 aaaatctatgtacacgagattttctcactgtatcaagaatggaggagagtttattgtttt 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3723 aaaatctatgtacacgagattttctcactgtatcaagaatggaggagagtttatcgtttt 3664
Query: 220 cagtacatgtgaagacaccttcgaaatcatcacttcttctcatcagagcttccccaacgg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3663 cagtacatgtgaagacaccttcgaaatcatcacttcttctcatcagagcttccccaacgg 3604
Query: 280 atagggaaagatcgttgtatatgcctcccttaatgagacctaggacatcaacggcttcgt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603 atagggaaagatcgttgtatatgcctcccttaatgagacctaggacatcaacggcttcgt 3544
Query: 340 agacgttgaccaatttaccttgctcatcgacaattggaacactggaaacgcctccagcca 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3543 agacgttgaccaatttaccttgctcatcgacaattggaacactggaaacgcctccagcca 3484
Query: 400 gagttaaaagttgaatgacatctattactggcgtgctcatttgacaactcatgatgttat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3483 gagttaaaagttgaatgacatctattactggcgtgctcatttgacaactcatgatgttat 3424
Query: 460 ttgtcgatataatgtccaactcacgtagaggcctctttagatagcggatttccttgcagt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3423 ttgtcgatataatgtccaactcacgtagaggcctctttagatagcggatttccttgcagt 3364
Query: 520 tcaatgccacaaattttaggatacggtattgtgttaacacactcacgacaatttctcttt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3363 tcaatgccacaaattttaggatacggtattgtgttaacacactcacgacaatttctcttt 3304
Query: 580 gagtctcttcatcttgatcaatcaaagggatcctcctggaccgggattctatcatcttca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3303 gagtctcttcatcttgatcaatcaaagggatcctcctggaccgggattctatcatcttca 3244
Query: 640 cacatgcttcatacaacggtctgaatggatgaattgatcttgtatcgtaaggctggatgc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3243 cacatgcttcatacaacggtctgaatggatgaattgatcttgtatcgtaaggctggatgc 3184
Query: 700 caatggccctttcaatatctttgagtccgttcaattgtagtttatccaccagttcaaact 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3183 caatggccctttcaatatctttgagtccgttcaattgtagtttatccaccagttcaaact 3124
Query: 760 tatccgggttgtggaaataatattgaatcacattgatgaagtctgaacttgtcaataaac 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3123 tatccgggttgtggaaataatattgaatcacattgatgaagtctgaacttgtcaataaac 3064
Query: 820 ctgcaaa-ttggaagtttgagcattccacaagggagcagaaac-acattgttttgtaaca 877
||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 3063 ctgcaaatttggaagtttgagcatcccacaagggagcagaaacaacattgttttgtaaca 3004
Query: 878 ggatatttaacgattttttcactagtaaagaagtgtccaacac 920
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3003 ggatatttaacgattttttcactagtaaagaagtgtccaacac 2961
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7068
Number of Sequences: 1807
Number of extensions: 7068
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)