BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB09FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig721 1578 0.0
>3x_Contig721
Length = 1977
Score = 1578 bits (796), Expect = 0.0
Identities = 869/888 (97%), Gaps = 7/888 (0%)
Strand = Plus / Minus
Query: 86 gctaaattgttctcggctagtctggacgccatattgagtttatccatcatctccaattca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 gctaaattgttctcggctagtctggacgccatattgagtttatccatcatctccaattca 1715
Query: 146 gaatcaaggtccgcatctgtctcatcccctccgtgttttctcaatctgtgggccttcggc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 gaatcaaggtccgcatctgtctcatcccctccgtgttttctcaatctgtgggccttcggc 1655
Query: 206 ctcccgttttcttttttcatttgtgcttcgagagatttcttgttcacagtacgacggata 265
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 ctcccgttttcattactcatttgtgcttcgagagatttcttgttcacagtacgacggata 1595
Query: 266 taaccataaatatacagttcttctcgcacgtcaaaccccaggttcgtaatttggaacagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 taaccataaatatacagttcttctcgcacgtcaaaccccaggttcgtaatttggaacagt 1535
Query: 326 aaattgatcaattttgcgaattcagaagttttaaggtccgtagtcagacctgctgctggc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 aaattgatcaattttgcgaattcagaagttttaaggtccgtagtcagacctgctgctggc 1475
Query: 386 tttttttatgcagataaagctcaaagcatgtggttcctttgtacaatcttgatattcttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 tttttttatgcagataaagctcaaagcatgtggttcctttgtacaatcttgatattcttg 1415
Query: 446 ttcctcgaattgtcttacttttcagcattttggaacatgaaaaaggaactgaaattcaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 ttcctcgaattgtcttacttttcagcattttggaacatgaaaaaggaactgaaattcaaa 1355
Query: 506 taataaattccaagtcactgggtgatatgtaaaggtaatttgggacatccagaaatttga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 taataaattccaagtcactgggtgatatgtaaaggtaatttgggacatccagaaatttga 1295
Query: 566 aaggagtaaagctggagcctgtgattgataaattcatttgcttacagagttgattcacag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 aaggagtaaagctggagcctgtgattgataaattcatttgcttacagagttgattcacag 1235
Query: 626 tcacttcaaacctgtaactgctgttcgggtttcttctagactggtgagaactatcatatc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 tcacttcaaacctgtaactgctgttcgggtttcttctagactggtgagaactatcatatc 1175
Query: 686 ataatttaggttttgttctctcacactttgaatacaaaaataataagtagttgttgatat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 ataatttaggttttgttctctcacactttgaatacaaaaataataagtagttgttgatat 1115
Query: 746 accttaaaagagctatgtcagcaactggaactgntgcatcatctactataaaaccttat- 804
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1114 accttaaaagagctatgtcagcaactggaactgttgcatcatctactat-aaaccttata 1056
Query: 805 aagactatttgtc-gcgcangcctattagctattccatatgctntncgttgtgatggggt 863
||||||| ||||| ||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1055 aagacta-ttgtcggcgcaggcctattagctattccatatgctttccgttgtgatggggt 997
Query: 864 tttttttgctgntagtttgatactgatggctgcattcacatcagggtacggcttatttat 923
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 tttttttgctgttagtttgatactgatggctgcattcacatcagggtacggcttatttat 937
Query: 924 cctagc-aaatgctcaagnacatgnt--aatccacgtcactcttcttt 968
|||||| |||||||||| |||| | ||||||||||||||||||||
Sbjct: 936 cctagcaaaatgctcaaagacattgttaaatccacgtcactcttcttt 889
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7201
Number of Sequences: 1807
Number of extensions: 7201
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)