BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB09RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1516 1614 0.0
>3x_Contig1516
Length = 8750
Score = 1614 bits (814), Expect = 0.0
Identities = 872/891 (97%), Gaps = 1/891 (0%)
Strand = Plus / Plus
Query: 43 gctttgtccaagatctctccaaatttttccattgccagtgccttcggtaacgtccacggt 102
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 5077 gctttgtccaagatctctccaaacttctccattgccagtgccttcggtaacgtccacggt 5136
Query: 103 gtttacaagatcgccgctgccctaaaaccagaattgttgggtactttccaagactacgct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5137 gtttacaagatcgccgctgccctaaaaccagaattgttgggtactttccaagactacgct 5196
Query: 163 gctaagcaattaaacaagaaggcagaagacaagccattgtacttggtcttccacggtggt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5197 gctaagcaattaaacaagaaggcagaagacaagccattgtacttggtcttccacggtggt 5256
Query: 223 tccggttcctccaccaaggacttccatactgccatcgatttcggtgtcgtaaaggtcaac 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5257 tccggttcctccaccaaggacttccatactgccatcgatttcggtgtcgtaaaggtcaac 5316
Query: 283 ttggatactgactgtcaattcgcttacttgtccggtatcagagactacgtcttgaacaag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5317 ttggatactgactgtcaattcgcttacttgtccggtatcagagactacgtcttgaacaag 5376
Query: 343 aaggactacttgatgaccccagtcggtaacccaaccggtgaagactctccaaacaagaag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5377 aaggactacttgatgaccccagtcggtaacccaaccggtgaagactctccaaacaagaag 5436
Query: 403 tactacgacccaagagtctgggttagagaaggtgaaaagaccatgagcaagagaatcact 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437 tactacgacccaagagtctgggttagagaaggtgaaaagaccatgagcaagagaatcact 5496
Query: 463 caagctttggaaatcttccgtactaagggtgctttggaataaagttcttttgtttagtac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5497 caagctttggaaatcttccgtactaagggtgctttggaataaagttcttttgtttagtac 5556
Query: 523 cattatcccaaacaatttaacttataattttctatatacaatttaaataccagaacgcat 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 cattatcccaaacaatttaacttataattttctatatacaatttaaataccagaacgcat 5616
Query: 583 gaaatgatcaaatgaagacatctgaaccattagttacaaaatgattggcagggatccgct 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 gaaatgatcaaatgaagacatctgaaccattagttacaaaatgattggcagggatccgct 5676
Query: 643 gtgcatcggatacgttcaccagtgttatccttggacgctaccgaggacttacctgttatc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 gtgcatcggatacgttcaccagtgttatccttggacgctaccgaggacttacctgttatc 5736
Query: 703 gaactgcatttgtctttttctctcacgtgatcgactttgtctcatagtccagtttggctt 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5737 gaactgcatttgtctttttctctcacgtgatcgactttgtctcatagtccagtttggctt 5796
Query: 763 anatatganagcagagtt-aaaaacataggaacagttacaatcaaacaaagtcacgttca 821
| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5797 aaatatgaaagcagagttaaaaaacataggaacagttacaatcaaacaaagtcacgttca 5856
Query: 822 tagttcctttacacaattaacactncagaaacaaatacaagaaacatggaggactcaaag 881
|||| |||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||
Sbjct: 5857 tagtcccttaacacaattacaactccagaaacaaatacaagaaacagggaggactcaaag 5916
Query: 882 cgattgatttttacttccatcttccggtgaattttacacacccgactttat 932
|||| |||||||||| | |||| ||||||||||| ||| ||||||||||
Sbjct: 5917 cgatggatttttactccaatctcccggtgaatttacaacaaccgactttat 5967
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6252
Number of Sequences: 1807
Number of extensions: 6252
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)