BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB10FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1528 1616 0.0
>3x_Contig1528
Length = 10737
Score = 1616 bits (815), Expect = 0.0
Identities = 850/859 (98%), Gaps = 3/859 (0%)
Strand = Plus / Plus
Query: 89 atcaaacctgatagtgctgatgatatcaaggaaaaagcgtcaaagctgggtattgtcaca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 atcaaacctgatagtgctgatgatatcaaggaaaaagcgtcaaagctgggtattgtcaca 2183
Query: 149 ttagccgaagaagactacaaggaaattaaaaagcctttgactcgcgagctactggaagca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 ttagccgaagaagactacaaggaaattaaaaagcctttgactcgcgagctactggaagca 2243
Query: 209 agggccaaagaactagaactcgtcacgctaccagttttagaatacagtgccctcaaaaaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 agggccaaagaactagaactcgtcacgctaccagttttagaatacagtgccctcaaaaaa 2303
Query: 269 ccgttgacagttacagacataaaacagaaatgtgaagattggggtttagttcctatagaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 ccgttgacagttacagacataaaacagaaatgtgaagattggggtttagttcctatagaa 2363
Query: 329 aaagacatatatgaagaccttttgaacaagttcaacgatgactctgtcagtgaatgggcg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 aaagacatatatgaagaccttttgaacaagttcaacgatgactctgtcagtgaatgggcg 2423
Query: 389 aaagaacatgggaaagttattgtctcgaaagacgaatatgaccatctgttggaagtcgag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2424 aaagaacatgggaaagttattgtctcgaaagacgaatatgaccatctgttggaagtcgag 2483
Query: 449 gatcaagcggcttctgttgcaatgactagggatgagttgatagaaagagcccatgagctc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2484 gatcaagcggcttctgttgcaatgactagggatgagttgatagaaagagcccatgagctc 2543
Query: 509 aacattataccgattgatgctgacaaatttgaagaaatacaacgcgaattagcttcctcc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2544 aacattataccgattgatgctgacaaatttgaagaaatacaacgcgaattagcttcctcc 2603
Query: 569 ggcagaaacagtatgacggaggacgacgttgttttgaaagctaaagaattaggatttgtg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2604 ggcagaaacagtatgacggaggacgacgttgttttgaaagctaaagaattaggatttgtg 2663
Query: 629 cctatcccagtgtcccagtatgatccaaataccgcgattggtatttctaaagacgatctc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2664 cctatcccagtgtcccagtatgatccaaataccgcgattggtatttctaaagacgatctc 2723
Query: 689 atgatacgcgcacgagatcttggtcttgttcccattcctattgagcagtttgaacagatt 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 atgatacgcgcacgagatcttggtcttgttcccattcctattgagcagtttgaacagatt 2783
Query: 749 aagaaagaattggagacgccaaccttgaccagngaacaaatagttgagcatgccgctgat 808
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2784 aagaaagaattggagacgccaaccttgaccagggaacaaatagttgagcatgccgctgat 2843
Query: 809 ttcaatttgatagcttttagatttaacggagtacaaacgttttgaagaaggggttcgtat 868
|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 2844 ttcaatttgatagc-tttagatttaacggagtacaaacg-tttgaagaa-gggttcgtat 2900
Query: 869 ttgatggataacgacaatgacactgattctgnagaagatgaagagggagaagaagacgcn 928
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 2901 ttgatggataacgacaatgacactgattctgaagaagatgaagaggaagaagaagacgca 2960
Query: 929 naggtcgttgactttgaga 947
|||||||||||| |||||
Sbjct: 2961 gaggtcgttgactctgaga 2979
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6579
Number of Sequences: 1807
Number of extensions: 6579
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)