BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB10RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1689 1544 0.0
3x_Contig1579 127 4e-29
>3x_Contig1689
Length = 13711
Score = 1544 bits (779), Expect = 0.0
Identities = 803/807 (99%), Gaps = 3/807 (0%)
Strand = Plus / Plus
Query: 49 ttacgaagtttggcgagtttatcatcaaatactttattcgccggccctagttgctgaata 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12907 ttacgaagtttggcgagtctatcatcaaatactttattcgccggccctagttgctgaata 12966
Query: 109 tccagaaagatctctttgggataacctttgcgaaggcaataagaatcattcttcagaata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12967 tccagaaagatctctttgggataacctttgcgaaggcaataagaatcattcttcagaata 13026
Query: 169 tacttattatggttgctttgactttctacagttgattggaactccttttcaatgctacac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13027 tacttattatggttgctttgactttctacagttgattggaactccttttcaatgctacac 13086
Query: 229 cttcgaagcaatgcttcatcagcttgtttttcttttactgccttatcatagaacgctttt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13087 cttcgaagcaatgcttcatcagcttgtttttcttttactgccttatcatagaacgctttt 13146
Query: 289 agtttaatcacctcttcctgcgggttataatcatcacagtaagtgttcttcatattacct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13147 agtttaatcacctcttcctgcgggttataatcatcacagtaagtgttcttcatattacct 13206
Query: 349 aataatattaaaactaatcagcagtattacttcattgacagcggatattttagatctgcc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13207 aataatattaaaactaatcagcagtattacttcattgacagcggatattttagatctgcc 13266
Query: 409 agctattttttgtctataaactttatagctgttctttcctttacttgttaaaggttcatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13267 agctattttttgtctataaactttatagctgttctttcctttacttgttaaaggttcatc 13326
Query: 469 ctgtgtcaacaattttgttatcgattatggtttacaaagaaaatcatgtaaattcgtaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13327 ctgtgtcaacaattttgttatcgattatggtttacaaagaaaatcatgtaaattcgtaaa 13386
Query: 529 gagttaaagaataacgcggctgttgggtaataggagtccctatcttcttctcgaatgtgc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13387 gagttaaagaataacgcggctgttgggtaataggagtccctatcttcttctcgaatgtgc 13446
Query: 589 agtcagaatgattgttcgatgtatatatgcagaacttagaaactagtctatctgataaat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13447 agtcagaatgattgttcgatgtatatatgcagaacttagaaactagtctatctgataaat 13506
Query: 649 ataaggggtgtttatttaatatttaataaccagtccatacgctctaggtgaagatttgtc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13507 ataaggggtgtttatttaatatttaataaccagtccatacgctctaggtgaagatttgtc 13566
Query: 709 gtatacctgctcaaccggtatatactcgacatgagtatattcaggaacagcataatcttt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13567 gtatacctgctcaaccggtatatactcgacatgagtatattcaggaacagcataatcttt 13626
Query: 769 actgaagaat-aagtgatttgagcgtttttgcattcagagagcgtgaggatcaactgctc 827
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13627 actgaagaataaagtgatttgagcgtttttgcattcagagagcgtgaggatc-actgctc 13685
Query: 828 atgagagtccaaaaacaaggttatgaa 854
|||||||||| ||||||||||||||||
Sbjct: 13686 atgagagtcc-aaaacaaggttatgaa 13711
>3x_Contig1579
Length = 11264
Score = 127 bits (64), Expect = 4e-29
Identities = 66/67 (98%)
Strand = Plus / Minus
Query: 837 caaaaacaaggttatgaaatgtcttttaaaaccattctcgnagatgattacatcatgagc 896
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 11260 caaaaacaaggttatgaaatgtcttttaaaaccattctcggagatgattacatcatgagc 11201
Query: 897 atagttt 903
|||||||
Sbjct: 11200 atagttt 11194
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6538
Number of Sequences: 1807
Number of extensions: 6538
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 2
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)