BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB11FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1326 0.0
>3x_Contig1521
Length = 8057
Score = 1326 bits (669), Expect = 0.0
Identities = 700/712 (98%)
Strand = Plus / Plus
Query: 228 ttaacatttgtgcgttgcaagacagtttgcaagtacctactctttatttcttttaaatcg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ttaacatttgtgcgttgcaagacagtttgcaagtacctactctttatttcttttaaatcg 151
Query: 288 atcatttcataatgaaaacagttctacttccacttaaaattaaggatacagagagtatta 347
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 152 atcatttcataatgaaaacagttctacttccactttaaattaaggatacagagagtatta 211
Query: 348 gttggacaaaagggttaataacctatttgaaaaggtcatacggatctagccagtggtccg 407
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gttggacaaaagggtttataacctatttgaaaaggtcatacggatctagccagtggtccg 271
Query: 408 tgttttatgatggcgacaagacggcagagattgattcgtgtaggaccactgctaattcag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgttttatgatggcgacaagacggcagagattgattcgtgtaggaccactgctaattcag 331
Query: 468 atcttgcgccagaatcattattagatcagaactataagtacgccgctatattggagcaaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atcttgcgccagaatcattattagatcagaactataagtacgccgctatattggagcaaa 391
Query: 528 tctatctaaggttaggcgcacacagcggttcattacagatggatttcacgtggtatgaag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tctatctaaggttaggcgcacacagcggttcattacagatggatttcacgtggtatgaag 451
Query: 588 cagaatatcactctaggttgtcagaaaaaaaattcaagcaacatactgtagtctttgaga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cagaatatcactctaggttgtcagaaaaaaaattcaagcaacatactgtagtctttgaga 511
Query: 648 aatcatctgtcatgtacaacatcggtgttctattgtctcaaatcgctaagaaaaaaatgt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aatcatctgtcatgtacaacatcggtgttctattgtctcaaatcgctaagaaaaaaatgt 571
Query: 708 ctgataattataagagcgcgattccttatttgagcaaggcaatggcttgcttcgattata 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctgataattataagagcgcgattccttatttgagcaaggcaatggcttgcttcgattata 631
Query: 768 tgtcgaacaactttttgaattcaccttctatcgattgtgcagcagaaaatacatcttttc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgtcgaacaactttttgaattcaccttctatcgattgtgcagcagaaaatacatcttttc 691
Query: 828 tctccacattgntgcacgccgaagctcangaaaatgttctcatgacgttgattaatggac 887
||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 692 tctccacattgttgcacgccgaagctcaggaaatgtttctcatgacgttgattaatggac 751
Query: 888 cagatgcttncgaaagagcatctttgatcagcanactagcacatactgnctt 939
||||||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct: 752 cagatgcttcgaaaagagcatctttgatcagcaaactagcacatactgcctt 803
Score = 153 bits (77), Expect = 8e-37
Identities = 84/85 (98%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 135 tcattaatcgacctagccatctacaaacaaactacttaactcaagaacgataaagcactt 194
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tcattaatcgacctagccatctacaaacaaactacttaac-caagaacgataaagcactt 59
Query: 195 gggcaatcaaagatagaaccactac 219
|||||||||||||||||||||||||
Sbjct: 60 gggcaatcaaagatagaaccactac 84
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7288
Number of Sequences: 1807
Number of extensions: 7288
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)