BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB11RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1649 0.0
>3x_Contig1426
Length = 8319
Score = 1649 bits (832), Expect = 0.0
Identities = 876/884 (99%), Gaps = 5/884 (0%)
Strand = Plus / Plus
Query: 44 atacattgctgaaggggttggggnccgaaagtattatcacgttccatcaaaacaaagtat 103
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 7052 atacattgctgaaggggttgggg-ccgaaagtattatc-cgttccatcaaaacaaagtat 7109
Query: 104 tatatttttactggtggtactctgaccagtgcccaaagaggatgatgccattgaatttct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7110 tatatttttactggtggtactctgaccagtgcccaaagaggatgatgccattgaatttct 7169
Query: 164 aagaaaagcatagaagagctatgctattttttttggcacttttttcggcttgatgtctcg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7170 aagaaaagcatagaagagctatgctattttttttggcacttttttcggcttgatgtctcg 7229
Query: 224 aaatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatattaca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7230 aaatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatattaca 7289
Query: 284 tccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttcgtt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7290 tccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttcgtt 7349
Query: 344 acccgcatttgtgacagaaatttcactcaatctgaatgaggaagccagcatagatagaag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7350 acccgcatttgtgacagaaatttcactcaatctgaatgaggaagccagcatagatagaag 7409
Query: 404 agaattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgatttaag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7410 agaattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgatttaag 7469
Query: 464 tacccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaacacg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7470 tacccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaacacg 7529
Query: 524 ttctacgtcggttgagtttgttagctgtaatccgactctaatcactagatctgctgattt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7530 ttctacgtcggttgagtttgttagctgtaatccgactctaatcactagatctgctgattt 7589
Query: 584 gctcgcaaaccctggtgactgagatagatatttttcaatggacgctttgagtacctcggc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7590 gctcgcaaaccctggtgactgagatagatatttttcaatggacgctttgagtacctcggc 7649
Query: 644 gctcttctcgtccttctgtgtagcatctgattgaatgtcctctcttttaattttctcccg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7650 gctcttctcgtccttctgtgtagcatctgattgaatgtcctctcttttaattttctcccg 7709
Query: 704 ctctaacgtatcccggttcaattttcttgcaaacttgctgtcatttgtagataatgcagt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7710 ctctaacgtatcccggttcaattttcttgcaaacttgctgtcatttgtagataatgcagt 7769
Query: 764 cctactctttcttattttacctgccctaccgaatttaccagtccaagtcggagtgccaac 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7770 cctactctttcttattttacctgccctaccgaatttaccagtccaagtcggagtgccaac 7829
Query: 824 atcaaaccttttagttttgtttccgtgagttttttattgcatcaagtgcagatttggacg 883
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 7830 atcaaaccttttag-tttgtttccgtgagttttttaatgcatcaagtgcagattt-gacg 7887
Query: 884 ttacgagttagcttctgcccccatgatatcatctctcttgttag 927
||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct: 7888 ttacgag-tagcttctgccccaatgatatcatctctctcgttag 7930
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7706
Number of Sequences: 1807
Number of extensions: 7706
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)