BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB12FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1389 1513 0.0
>3x_Contig1389
Length = 7926
Score = 1513 bits (763), Expect = 0.0
Identities = 836/855 (97%), Gaps = 5/855 (0%)
Strand = Plus / Minus
Query: 85 cttcaaatacataaaggacttctttagacgatagttcctgcgctccgagcacttgagtca 144
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5909 cttcaaata-ataaaggacttctttagacgatagttcctgcgctccgagcacttgagtca 5851
Query: 145 aaattggatttcttgacacggcttcctttcttgtctccaacatctctttagtatccaaag 204
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5850 aaattggatttcttgacacggcttcctcgcttgtctccaacatctctttagtatccaaag 5791
Query: 205 aatcttttattttcntttcctttagtctgttcttatcgaaactaggaggtttcgattcgg 264
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 aatcttttattttcttttcctttagtctgttcttatcgaaactaggaggtttcgattcgg 5731
Query: 265 cacttctctcaccctcatttacctcagtttcatcatcacggaactctttcacggagagct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 cacttctctcaccctcatttacctcagtttcatcatcacggaactctttcacggagagct 5671
Query: 325 tagctgatgttgtattcttaaactcattcaatctttgctgaagcgtttcctctgcaacat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 tagctgatgttgtattcttaaactcattcaatctttgctgaagcgtttcctctgcaacat 5611
Query: 385 gagatattgccacgatttcagaatgcgttcttctcaaattgttcattctacaggcaagta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5610 gagatattgccacgatttcagaatgcgttcttctcaaattgttcattctacaggcaagta 5551
Query: 445 agagacatgcacctgcgataccagctggtcttctcccttcatacatccaatctctggaca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5550 agagacatgcacctgcgataccagctggtcttctcccttcatacatccaatctctggaca 5491
Query: 505 tagtttgtgccagtttcacagcgtcccttatcactttaatctttttatcaccaagctcca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5490 tagtttgtgccagtttcacagcgtcccttatcactttaatctttttatcaccaagctcca 5431
Query: 565 atttctccgcgaaatgttgaatgaacaaagatgggtcagctagaggtaacttaactattt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5430 atttctccgcgaaatgttgaatgaacaaagatgggtcagctagaggtaacttaactattt 5371
Query: 625 gtaacttcttcgctagcttcaaaaatgtggcaccaatagaataaacactcacttgtaacc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5370 gtaacttcttcgctagcttcaaaaatgtggcaccaatagaataaacactcacttgtaacc 5311
Query: 685 ttgatgaaaagtcaataagcatgtgatgagtacgttctttacgacatgcgatgtacaaac 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5310 ttgatgaaaagtcaataagcatgtgatgagtacgttctttacgacatgcgatgtacaaac 5251
Query: 745 aagcggcaatcacattttgtgatttcctacctttgaccaaa-tattactcaaagccaatc 803
||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct: 5250 aagcggcaatcacattttgtgatttcctaccttgaacaaaattattactcaaagccaatc 5191
Query: 804 tataccatntgaaagcagcatcagtaacatattcgggaatattttacgcatagnagacag 863
|||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 5190 tataccattggaaagcagcatcagtaacatattcgggaatatttaacgcataggagacag 5131
Query: 864 ctttcaacttccgcctagcgttgntc-aagtagtttctttggacatc-aagctttttgac 921
||||||||||||||||||||||| || ||||||||||| |||||||| |||| || ||||
Sbjct: 5130 ctttcaacttccgcctagcgttgttcaaagtagtttctctggacatcaaagcattctgac 5071
Query: 922 c-gaatgtgacataa 935
| |||||||||||||
Sbjct: 5070 cggaatgtgacataa 5056
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5981
Number of Sequences: 1807
Number of extensions: 5981
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)