BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZB12RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 1479 0.0
3x_Contig1051 147 5e-35
3x_Contig1718 145 2e-34
3x_Contig844 145 2e-34
3x_Contig1747 143 7e-34
3x_Contig1468 143 7e-34
3x_Contig939 135 2e-31
>3x_Contig1184
Length = 5183
Score = 1479 bits (746), Expect = 0.0
Identities = 836/861 (97%), Gaps = 4/861 (0%)
Strand = Plus / Minus
Query: 66 gcacgtttctttttgatatttacgctgcaacagagaaaagagacattttgaccgcgatga 125
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2622 gcacgtttctttttgatatttaagctgcaacagagaaaagagacattttgaccgcgatga 2563
Query: 126 gattaaggtaccattacctcattctcaaatatacgtgcgattcgctaaacataactacgt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 gattaaggtaccattacctcattctcaaatatacgtgcgattcgctaaacataactacgt 2503
Query: 186 tgactgactcataggaaaggcccatctttttatggatgctcctaatgacgatagaatgct 245
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 2502 tgactgactcataggaaaggcccatcattagatggatgctcctaatgacgatagaatgct 2443
Query: 246 tgaatatgttattattgtagatttcagtgacttagagtcatagtattccagttcaacata 305
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2442 tgaatatgtgaagattgtagatttcagtgacttagagtcatagtattccagttcaacata 2383
Query: 306 aacaagacaaaaactaacgtccattggcgtttcttacttgaattttcctgttcagcatac 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2382 aacaagacaaaaactaacgtccattggcgtttcttacttgaattttcctgttcagcatac 2323
Query: 366 tatatgaagcttgcatacttaccatgttgggtcctactggacactgtagttagatggcag 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 tatatgaagcttgcatacttaccatgttgggtcctactggacactgtagttagatggcag 2263
Query: 426 aagattagattgtaataagaaaatcacgtttgattatgaatgcacgtga-caaaagaact 484
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2262 aagattagattgtaataagaaaatcacgtttgattatgaatgcacgtgatcaaaagaact 2203
Query: 485 aaacatagtgctcgagagtttagtactttcaaaaaaaaagctcccgtggcgtaatggcaa 544
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 2202 aaacatagtgctcgagagtttagtactttgaaaaaaaaagctcccgtggcgtaatgggaa 2143
Query: 545 cgcgtctgacttctaatcagaagattgtgggttcgacccccaccgtgagtgcttttattt 604
| || |||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct: 2142 ggggtgtgacttctaatcagaagattgt-gtttttacccccaccgtgagtgcttttattt 2084
Query: 605 ttttaatttttttttacatctctggtcttctttttctaaggaatgagagcattaggaagg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 ttttaatttttttttacatctctggtcttctttttctaaggaatgagagcattaggaagg 2024
Query: 665 aaggcattgctgcagcaatgttcataatatcaacagatactacccaccattttgtgttat 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 aaggcattgctgcagcaatgttcataatatcaacagatactacccaccattttgtgttat 1964
Query: 725 tcttttattcaacgtacctatattatgtattatacagctctaatcttttagaacgtatga 784
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1963 tcttttattcaacgtacctatattatgtattatacagctctaatctttaagaacgtatga 1904
Query: 785 taataatctatagttaatgaaacattaaatactaatacgtcgcagacgcattaccgtttg 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 taataatctatagttaatgaaacattaaatactaatacgtcgcagacgcattaccgtttg 1844
Query: 845 tcatcggtgcaacatgctcacaattggcctttgttatcgccattgtcctgganaattgga 904
||||||||||||||||||||||||| | ||||||||||| ||||||||| || |||||||
Sbjct: 1843 tcatcggtgcaacatgctcacaatt-gtctttgttatcgtcattgtcct-gagaattgga 1786
Query: 905 aataagctttgatttttccca 925
|| |||||||||||||||||
Sbjct: 1785 gatgagctttgatttttccca 1765
>3x_Contig1051
Length = 4315
Score = 147 bits (74), Expect = 5e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 522 aagctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgac 581
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 aagctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgac 3960
Query: 582 ccccaccgtgagtgcttt 599
||||||||||||||||||
Sbjct: 3961 ccccaccgtgagtgcttt 3978
>3x_Contig1718
Length = 19496
Score = 145 bits (73), Expect = 2e-34
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 523 agctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgacc 582
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4418 agctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgacc 4359
Query: 583 cccaccgtgagtgcttt 599
|||||||||||||||||
Sbjct: 4358 cccaccgtgagtgcttt 4342
>3x_Contig844
Length = 2953
Score = 145 bits (73), Expect = 2e-34
Identities = 83/85 (97%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 524 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 583
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 1638
Query: 584 ccaccgtgagtgcttttattttttt 608
||||||||||||| |||||||||||
Sbjct: 1639 ccaccgtgagtgc-tttattttttt 1662
>3x_Contig1747
Length = 15671
Score = 143 bits (72), Expect = 7e-34
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 524 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 583
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2555 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 2496
Query: 584 ccaccgtgagtgcttt 599
||||||||||||||||
Sbjct: 2495 ccaccgtgagtgcttt 2480
>3x_Contig1468
Length = 9852
Score = 143 bits (72), Expect = 7e-34
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 524 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 583
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8709 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 8650
Query: 584 ccaccgtgagtgcttt 599
||||||||||||||||
Sbjct: 8649 ccaccgtgagtgcttt 8634
>3x_Contig939
Length = 3877
Score = 135 bits (68), Expect = 2e-31
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 524 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 583
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 2150
Query: 584 ccaccgtgagtg 595
||||||||||||
Sbjct: 2149 ccaccgtgagtg 2138
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8414
Number of Sequences: 1807
Number of extensions: 8414
Number of successful extensions: 141
Number of sequences better than 1.0e-20: 7
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)