BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC01FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 613 e-175
>3x_Contig1250
Length = 5563
Score = 613 bits (309), Expect = e-175
Identities = 378/396 (95%), Gaps = 5/396 (1%)
Strand = Plus / Minus
Query: 443 tgcgatgacttcttcttgaattctacctcattcttgttcatttcatggccaaccacatat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5563 tgcgatgacttcttcttgaattctacctcattcttgttcatttcatggccaaccacatat 5504
Query: 503 ctcattccaaatattctctttgagatatcataatactgtccgctcaagtagaatataatt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5503 ctcattccaaatattctctttgagatatcataatactgtccgctcaagtagaatataatt 5444
Query: 563 aagtgcaaattcaaagtggaatccaagatgtccctgaaactcttgccattgaatactttc 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5443 aagtgcaaattcaaagtggaatccaagatgtccctgaaactcttgccattgaatactttc 5384
Query: 623 aagaaaccagatcccctcttattgagcttatacttgtagaatactttcgataatatccac 682
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 aagaaaccagatcccctctcattgagcttatacttgtagaatactttcgataatatccac 5324
Query: 683 ggtaccccacaattactgatagcgaaaccaattccttcgcaagagtcttgcaacaccttt 742
||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||||| ||
Sbjct: 5323 ggtaccccacaataactgatagcgaaaccaa-tccttcgcaggagtctcgcaacacc-tt 5266
Query: 743 tttctcgcctatcaacatacgccaaatcaacgtactctttttccagcgttcttcttttcc 802
|| |||||||||||||||||||||||||||||||||||| | | |||||||| || | ||
Sbjct: 5265 ttcctcgcctatcaacatacgccaaatcaacgtactcttctccaagcgttctcctatacc 5206
Query: 803 cttaattgttgtaa-tgacaagtatatcaacttgct 837
| | |||||||| |||||||||||||||||||||
Sbjct: 5205 --ttagtgttgtaattgacaagtatatcaacttgct 5172
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6912
Number of Sequences: 1807
Number of extensions: 6912
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)