BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC01RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1650 1249 0.0
>3x_Contig1650
Length = 11257
Score = 1249 bits (630), Expect = 0.0
Identities = 718/746 (96%), Gaps = 1/746 (0%)
Strand = Plus / Minus
Query: 40 acagtttgttgcatcattgtagaaacggtacccatccgccacttattacaaagtgttaga 99
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 acagtttgttgcatcattgcagaaacggtacccatccgccacttattacaaagtgttaga 1701
Query: 100 gcaatatgtcaagtacaggcaatctcctgcgaaatatagttttgaaaatgggttaaagtt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 gcaatatgtcaagtacaggcaatctcctgcgaaatatagttttgaaaatgggttaaagtt 1641
Query: 160 gatcttggatgccaaatctcctccaagcgatgcgaaatcgctatcaatgtgccttcgatt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1640 gatcttggatgccaaatctcctccaagcgatgcgaaatcgctatcaatgtgccatcgatt 1581
Query: 220 tttgttggaattaggttttgacaccaccagtgcattggaaccttatgaaagagcaatgat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 tttgttggaattaggttttgacaccaccagtgcattggaaccttatgaaagagcaatgat 1521
Query: 280 gaaatacggtaattcggagacatgttatgattggttcttggagtcattgagggatttaaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 gaaatacggtaattcggagacatgttatgattggttcttggagtcattgagggatttaaa 1461
Query: 340 ttggagacatttgagtaagagtagtttccagatgccacgagtcaatgaaaaatcgaaatc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 ttggagacatttgagtaagagtagtttccagatgccacgagtcaatgaaaaatcgaaatc 1401
Query: 400 gagattgttccaattctggaacagtattgctactgtagtatggtttcagttggataaaga 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 gagattgttccaattctggaacagtattgctactgtagtatggtttcagttggataaaga 1341
Query: 460 taacattaacgaaagggaattggatcttttacctaagttgacatataaattgacaagcga 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 taacattaacgaaagggaattggatcttttacctaagttgacatataaattgacaagcga 1281
Query: 520 tttgaaaccttttgagaatgagcaagatttgatcgttttctgcatagtttgtgaattgtt 579
||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct: 1280 tttgaaaccttttgagaatgagcaagagttgatcgttttctgtaaagtttgtgaattgtt 1221
Query: 580 tgaggataaatcacaggagatcgttgacgagatcctcaagttttggaaacatggctctta 639
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1220 tgaggataaatcacaggagatcgtggacgagatcctcaagttttggaaacatggtactta 1161
Query: 640 cttagacctttattttgataacttccttatgtgccatttggtgaaatttgacgattattt 699
||||||||||||||| | |||||||||||| |||||||||||||||| |||||||||
Sbjct: 1160 cttagacctttatttgaaaaacttccttatgggccatttggtgaaattagacgattataa 1101
Query: 700 actcatttggaaacattgtatctttttttttgatttccttgactattatggtattttgca 759
|||||||||||||||| | |||| || || || ||||||| ||||||||||||||||
Sbjct: 1100 actcatttggaaacatggaatctcgttattgaataaccttgacgattatggtattttgca 1041
Query: 760 aaatgattttagatgcaagtttcaaa 785
||| |||| |||||||||||| ||||
Sbjct: 1040 aaa-gattatagatgcaagttacaaa 1016
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9251
Number of Sequences: 1807
Number of extensions: 9251
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)