BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC02FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 936 0.0
>3x_Contig1250
Length = 5563
Score = 936 bits (472), Expect = 0.0
Identities = 520/534 (97%), Gaps = 2/534 (0%)
Strand = Plus / Minus
Query: 443 tgcgatgacttcttcttgaattctacctcattcttgttcatttcatggccaaccacatat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5563 tgcgatgacttcttcttgaattctacctcattcttgttcatttcatggccaaccacatat 5504
Query: 503 ctcattccaaatattctctttgagatatcataatactgtccgctcaagtagaatataatt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5503 ctcattccaaatattctctttgagatatcataatactgtccgctcaagtagaatataatt 5444
Query: 563 aagtgcaaattcaaagtggaatccaagatgtccctgaaactcttgccattgaatactttc 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5443 aagtgcaaattcaaagtggaatccaagatgtccctgaaactcttgccattgaatactttc 5384
Query: 623 aagaaaccagatcccctctcattgagcttatacttgtagaatactttcgataatatccac 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 aagaaaccagatcccctctcattgagcttatacttgtagaatactttcgataatatccac 5324
Query: 683 ggtaccccacaataactgatagcgaaaccaatccttcgcangagtctcgcaacacctttt 742
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5323 ggtaccccacaataactgatagcgaaaccaatccttcgcaggagtctcgcaacacctttt 5264
Query: 743 cctcgcctatcaacatacgccaaatcaacgtacttcttctccaagcgttctcctatacct 802
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5263 cctcgcctatcaacatacgccaaatcaacgtac-tcttctccaagcgttctcctatacct 5205
Query: 803 tagtgntgtaattgacaagtatatcaacttgctgaggatcattatctcactaacatacct 862
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5204 tagtgttgtaattgacaagtatatcaacttgctgaggatcattatctcactaacatacct 5145
Query: 863 gttagtgaactgttgtccccttacttttcgtagtacatcctggatctttttgtacagc-a 921
||||||||||||||||||| | ||||| |||||||||||||||||||||| ||||| |
Sbjct: 5144 gttagtgaactgttgtcccttaactttccgtagtacatcctggatcttttgtaacagcaa 5085
Query: 922 gttttccacagtattattcttttgatgcgcttgaactatactaagtgcatcagc 975
|||||||||||||| || |||||||||||| |||||||||||| ||||||||||
Sbjct: 5084 gttttccacagtatcatccttttgatgcgcctgaactatactaggtgcatcagc 5031
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6019
Number of Sequences: 1807
Number of extensions: 6019
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)