BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC02RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1650 1610 0.0
>3x_Contig1650
Length = 11257
Score = 1610 bits (812), Expect = 0.0
Identities = 855/864 (98%), Gaps = 4/864 (0%)
Strand = Plus / Minus
Query: 38 acagtttgttgcatcatttcagaaacggtacccatccgccacttattacaaagtgttaga 97
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 acagtttgttgcatcattgcagaaacggtacccatccgccacttattacaaagtgttaga 1701
Query: 98 gcaatatgtcaagtacaggcaatctcctgcgaaatatagttttgaaaatgggttaaagtt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 gcaatatgtcaagtacaggcaatctcctgcgaaatatagttttgaaaatgggttaaagtt 1641
Query: 158 gatcttggatgccaaatctcctccaagcgatgcgaaatcgctatcattgtttcatcgatt 217
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 1640 gatcttggatgccaaatctcctccaagcgatgcgaaatcgctatcaatgtgccatcgatt 1581
Query: 218 tttgttggaattaggttttgacaccaccagtgcattggaaccttatgaaagagcaatgat 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 tttgttggaattaggttttgacaccaccagtgcattggaaccttatgaaagagcaatgat 1521
Query: 278 gaaatacggtaattcggagacatgttatgattggttcttggagtcattgagggatttaaa 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 gaaatacggtaattcggagacatgttatgattggttcttggagtcattgagggatttaaa 1461
Query: 338 ttggagacatttgagtaagagtagtttccagatgccacgagtcaatgaaaaatcgaaatc 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 ttggagacatttgagtaagagtagtttccagatgccacgagtcaatgaaaaatcgaaatc 1401
Query: 398 gagattgttccaattctggaacagtattgctactgtagtatggtttcagttggataaaga 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 gagattgttccaattctggaacagtattgctactgtagtatggtttcagttggataaaga 1341
Query: 458 taacattaacgaaagggaattggatcttttacctaagttgacatataaattgacaagcga 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 taacattaacgaaagggaattggatcttttacctaagttgacatataaattgacaagcga 1281
Query: 518 tttgaaaccttttgagaatgagcaagagttgatcgttttctgtaaagtttgtgaattgtt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 tttgaaaccttttgagaatgagcaagagttgatcgttttctgtaaagtttgtgaattgtt 1221
Query: 578 tgaggataaatcacaggagatcgtggacgagatcctcaagttttggaaacatggtactta 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 tgaggataaatcacaggagatcgtggacgagatcctcaagttttggaaacatggtactta 1161
Query: 638 cttagacctttatttgaaaaacttccttatgggccatttggtgaaattagacgattataa 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 cttagacctttatttgaaaaacttccttatgggccatttggtgaaattagacgattataa 1101
Query: 698 actcatttggaaacatggaatctcgttattgaataaccttgacgattatggtattttgca 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 actcatttggaaacatggaatctcgttattgaataaccttgacgattatggtattttgca 1041
Query: 758 aaagattatagatgcaagttacaaactttgcaagtcattcgatgagttattggaagtttt 817
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1040 aaagattatagatgcaagttacaaacttggcaagtcattcgatgagttattggaagtttt 981
Query: 818 ggaaatcaag-atacgagaaatt-catactagcaaga-tcgcagcagc-aaactttatga 873
|||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||
Sbjct: 980 ggaaatcaagaatacgagaaattacatactagcaagagtcgcagcagcaaaactttatga 921
Query: 874 cgataggctagatcactacctgtt 897
||||||||||||||||||||||||
Sbjct: 920 cgataggctagatcactacctgtt 897
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7515
Number of Sequences: 1807
Number of extensions: 7515
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)