BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC03FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 1550 0.0
>3x_Contig787
Length = 1880
Score = 1550 bits (782), Expect = 0.0
Identities = 860/886 (97%)
Strand = Plus / Plus
Query: 84 cttgtaaaatgaaaaaaaatcaaagccaacattataacagctacgaacgactcggtaaag 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cttgtaaaatgaaaaaaaatcaaagccaacattataacagctacgaacgactcggtaaag 885
Query: 144 tccagtagtagttttgaggtcaggcctcaaaaattaaccttaatttagttcgagtttatt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tccagtagtagttttgaggtcaggcctcaaaaattaaccttaatttagttcgagtttatt 945
Query: 204 acaattctaatataactacttttatgcaattctttcattattatttttagctattgttaa 263
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 946 acaattctaatataactactagtatgcaattctttcattattatttttagctattgttaa 1005
Query: 264 acgttttaggtctatatcccagaagaatactgggctgctgtaatccgtaatagattgtat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 acgttttaggtctatatcccagaagaatactgggctgctgtaatccgtaatagattgtat 1065
Query: 324 ctatttattatagattctattactatttttgatggttttcctgtacttacttactctttg 383
||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1066 ctatttattattgtttctattactattttttttggttttcctgtacttacttactctttg 1125
Query: 384 gtgcaagtttgaatgtcaagatatcgttaacaccttcgtccaccttatcatcttcactga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 gtgcaagtttgaatgtcaagatatcgttaacaccttcgtccaccttatcatcttcactga 1185
Query: 444 ccctgataccaccaacagtttcaatagcagctacagtgacgtcacccataatgtaagtag 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 ccctgataccaccaacagtttcaatagcagctacagtgacgtcacccataatgtaagtag 1245
Query: 504 caactttccctaccgtagtccccttcttgaccagaaaacaatcgcggaacacattttcac 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 caactttccctaccgtagtccccttcttgaccagaaaacaatcgcggaacacattttcac 1305
Query: 564 cgttcccaccagcgaaggtatggatgttgcgtaccgtgtacaccgggatcaaatttaaag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 cgttcccaccagcgaaggtatggatgttgcgtaccgtgtacaccgggatcaaatttaaag 1365
Query: 624 tacttgcagctgcctgtaatacttgaacgacacctgtagaaccgaatctgaatagtacaa 683
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1366 tacttgcagctgcctgtaatacttgaacgacacctgtagaaccgaatctgtatagtacaa 1425
Query: 684 ggtctcgtataacttcaattctctgtatcagtttctcatctaacggttttaacgtatcgt 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 ggtctcgtataacttcaattctctgtatcagtttctcatctaacggttttaacgtatcgt 1485
Query: 744 catcgttaaacgtatcaacaaattctgtgccttcttcgtaacgtatgaaccattgtttcg 803
|||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1486 catcttcaaacgtatcaacaaattctgtgccttcttcgtaacgtatgaacccttgtttct 1545
Query: 804 ttaatttacggcagaaaacttcggtgatggcactcgataggacacatgtaacgtcagggt 863
| ||||||||| ||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct: 1546 tcaatttacggaggaaaacttcggtgatggcacttgttaggacacatttaacgtcagggt 1605
Query: 864 atttcaacataatcttactaacgattttatccgcatctggatgatccatcttgttgcaag 923
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 1606 atttcaacataatcttactaacgtttttatccgcatctggatgatccatcttgttcaaag 1665
Query: 924 tccacacagtggggaactttctttgcatgaacgacttaacaccttc 969
| |||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 1666 ccaacacagtggggaacttctcttgcatgaacgacttaacaacttc 1711
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6911
Number of Sequences: 1807
Number of extensions: 6911
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)