BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC03RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1714 1548 0.0
>3x_Contig1714
Length = 18873
Score = 1548 bits (781), Expect = 0.0
Identities = 856/877 (97%), Gaps = 3/877 (0%)
Strand = Plus / Plus
Query: 42 gcttttcgttccaaaccacccagattgcgatcttgtt-aaggtcctgacggaaaaacttt 100
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 5387 gcttttcgttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaacttt 5446
Query: 101 acgaattgttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5447 acgaattgttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcg 5506
Query: 161 tggtgttgaattgttggttgttccatgggattacgacttcaccaccgaagaatattattg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 5507 tggtgttgaattgttggttgttccatgggattacgacttcaccaccgaagaatatgacgg 5566
Query: 221 tttgttcatctctaatggtcctggtaatccagccattctgcaggaagtgtccgatagatt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5567 tttgttcatctctaatggtcctggtaatccagccattctgcaggaagtgtccgatagatt 5626
Query: 281 gactaaagttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaatt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5627 gactaaagttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaatt 5686
Query: 341 actagctcgtgcttctggtgcctcaactttgaagatgaagttcggtaacagaggtcacaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5687 actagctcgtgcttctggtgcctcaactttgaagatgaagttcggtaacagaggtcacaa 5746
Query: 401 tattccatgtacttcgactgtctctggtagatgttatatcacttctcaaaaccatggttt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 tattccatgtacttcgactgtctctggtagatgttatatcacttctcaaaaccatggttt 5806
Query: 461 cgctgtagatgaaactagtttgaccaatggctggaaatcattgttcaccaacgctaacga 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 cgctgtagatgaaactagtttgaccaatggctggaaatcattgttcaccaacgctaacga 5866
Query: 521 tggttccaatgaagggatttatcactcagagttgccttacttctccgttcaattccatcc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 tggttccaatgaagggatttatcactcagagttgccttacttctccgttcaattccatcc 5926
Query: 581 tgaatctactccaggtccaagagacactgaattcttgttcgatgtcttcattcaatctgt 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 tgaatctactccaggtccaagagacactgaattcttgttcgatgtcttcattcaatctgt 5986
Query: 641 tctagatttcaagcaaactggtgtattgaagcaagttgaattcccaggcggtaacattga 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5987 tctagatttcaagcaaactggtgtattgaagcaagttgaattcccaggcggtaacattga 6046
Query: 701 ggagaacttggctgctcatcctagagaagatgtcaagaaagttttagtctttggttccgg 760
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6047 ggagaacttggctgctcatcctagagaagatgtcaagaaagttttagtcttgggttccgg 6106
Query: 761 tgggttatctattggtcaagctggtgagtttgattattctggttcttcagccatcagggc 820
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 6107 tgggttatctattggtcaagctggtgagtttgattattctggttctcaagccatcaaggc 6166
Query: 821 tttaaagaaagaa-gtatctacacgaatcttattaaacctttatatcgctaccattcaaa 879
|||||| ||||| ||||||||||| |||||| | |||| | ||||||||||||||||||
Sbjct: 6167 tttaaaagaagaaggtatctacacg-atcttaattaaccctaatatcgctaccattcaaa 6225
Query: 880 actctaagggtttagctgataaagtgtacttcttgcc 916
|||||||||| |||||||||||||||||||||||||
Sbjct: 6226 cctctaagggtctagctgataaagtgtacttcttgcc 6262
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6989
Number of Sequences: 1807
Number of extensions: 6989
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)