BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC05FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1108 1318 0.0
>3x_Contig1108
Length = 6240
Score = 1318 bits (665), Expect = 0.0
Identities = 822/869 (94%), Gaps = 4/869 (0%)
Strand = Plus / Plus
Query: 89 cccatcaacttcgaaacagaaacaatgagggaaaactaatctgtgtcgtatgtattctcc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3203 cccatcaacttcgaaacagaaacaatgagggaaaactaatctgtgtcgtatgtattctcc 3262
Query: 149 ctgatcaacccttttcaaattattaattctcttgtgtgtcttgttaccggcttctttcat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3263 ctgatcaacccttttcaaattattaattctcttgtgtgtcttgttaccggcttctttcat 3322
Query: 209 gaattcacagggttagctcatttccatatatcgcttgattttaacttagtattcaatttt 268
|||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3323 gaattcgcagggtcagctcatttccatatatcgtttgattttaacttagtattcaatttt 3382
Query: 269 taatttcgctgaaattctttctccttggtggtaaatagtatggagatatatggatggaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3383 taatttcgctgaaattctttctccttggtggtaaatagtatggagatatatggatggaat 3442
Query: 329 ctgcgatgcgctacaaatttgacacatgatttgacgaaatgaaaagattgtttggttgaa 388
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3443 ctgcgatgcgctacaaatttgacacatgatttgacgaaatgaaaagattgttgggttgaa 3502
Query: 389 tggctgcacccgtgaataaaacgtaatctaataatctcatcttattgtagtaagtgcttc 448
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3503 tggctgcacccgtgaataaaacgtaatctaataatctcatcttattgtagtaggtgcttc 3562
Query: 449 accgggagtcacatcgatatgaatatgctacagtagttcggatctctataacttatttaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3563 accgggagtcacatcgatatgaatatgctacagtagttcggatctctataacttatttaa 3622
Query: 509 aaacgagagagcttcacgtgatgtatatcatttctcacatcatatctacatcttgaaact 568
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3623 aaacgagagagtatcacgtgatgtatatcatttctcacatcatatctacatcttgaaact 3682
Query: 569 acagcaagactggcaggcgtgctaatgcttacaataagaaacagtgtggttcgcagatac 628
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3683 acagcaagactggcaggcgtgctaatgcttacaataggaaacagtgtggttcgcagatag 3742
Query: 629 gggctaaagaatgtgtggtgtatgcaaccttaaggaggaagaacttctttttctcgaacg 688
|||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3743 gggcgaaggaatgtgtggtgtatgcaaccttaaggaggaagaactcctttttctcgaacg 3802
Query: 689 gtcaacctccgatgctgtacatacaggtatatataactccaatatccc-acaaacaaaag 747
|||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||
Sbjct: 3803 gtcaacctccgatgctgtacatccaggtatatataactccaatatcccaaaaaaaaaaag 3862
Query: 748 aatggctgcaacacgtcagtccaagggcatgacaatactgaagatagcaagctcgttgct 807
|||||||||||||||||||| ||||||| ||||| | | |||| |||||||| | |||
Sbjct: 3863 aatggctgcaacacgtcagtaaaagggcaggacaagagtaaagaaagcaagcttggtgca 3922
Query: 808 cttcacagagcacattatgtaccatttattgctgtacgcattcatggagc-ccatctagc 866
||||||| |||||||||||| ||||||||| |||||| |||||||||| | |||||||
Sbjct: 3923 cttcacaaagcacattatgtcccatttattagtgtacgatttcatggagcacgatctagc 3982
Query: 867 aaatgtgctgatcggtgttcaaccttcgaaccaaagtcctgtattcatttcgctgttcag 926
|||||||||||||| || ||||||||| | |||||| ||||||| |||||||| ||||
Sbjct: 3983 aaatgtgctgatcgtggtcaaaccttcgaccaaaagtcttgtattcgtttcgctg-tcag 4041
Query: 927 g-acgtaaactaaactattaggcgatgct 954
| ||| || | ||||||||||||||||||
Sbjct: 4042 gaacgaaaccaaaactattaggcgatgct 4070
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6459
Number of Sequences: 1807
Number of extensions: 6459
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)