BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC05RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 1499 0.0
>3x_Contig1496
Length = 9544
Score = 1499 bits (756), Expect = 0.0
Identities = 824/843 (97%), Gaps = 3/843 (0%)
Strand = Plus / Minus
Query: 69 agtttgaattgccgaaataaagagaacctctagcatatgatattaaactctttgcattaa 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3454 agtttgaattgccgaaataaagagaacctctagcatatgatattaaactctttgcattaa 3395
Query: 129 attgagactcgtcaagcggaattgatgtgtgggcatatatcaacgcacatttcccatcaa 188
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 3394 attgagactcgtcaagcggaattgatttgttggcatatatcaacgcacatttcccatcaa 3335
Query: 189 aagtaacaaactttataaacttgaaccatataatatcgttgaactatttttggaagagcg 248
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 3334 aagtaacaaactttataaacttgaaccagataatatc-ttgaactatttttggaagagcg 3276
Query: 249 aaccgcaatagattaataaatatcggtggatatctcatccatacacatttgttcgtatca 308
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3275 aaccgcaatagattaataaatatcggtggatatctcatccatacacatttcttcgtatca 3216
Query: 309 tttaggaaggaatcattctcttgtactttaccatatgattcttctaattcttctgggtta 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3215 tttaggaaggaatcattctcttgtactttaccatatgattcttctaattcttctgggtta 3156
Query: 369 tcttctgattgtaccgctgggtgaattctgctataatcttcagctgatttctgttcgata 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3155 tcttctgattgtaccgctgggtgaattctgctataatcttcagctgatttctgttcgata 3096
Query: 429 taatcgttgcaggagcgaaaggaaacgattggggtcttgttcaagctagaagagtgagct 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3095 taatcgttgcaggagcgaaaggaaacgattggggtcttgttcaagctagaagagtgagct 3036
Query: 489 ggaatattcccagacgctagctcaataagggtgataacatctagaagccggaacatgctc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3035 ggaatattcccagacgctagctcaataagggtgataacatctagaagccggaacatgctc 2976
Query: 549 tggaaacagagcatgatagaaaaagcttcaaaggaagatatctcagaatctacagcctca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975 tggaaacagagcatgatagaaaaagcttcaaaggaagatatctcagaatctacagcctca 2916
Query: 609 cttaattcggccacgtcgacaagtcttaattctgaatcgaatacgtcacatatcaaaata 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2915 cttaattcggccacgtcgacaagtcttaattctgaatcgaatacgtcacatatcaaaata 2856
Query: 669 tccaacttattaatattctctcgaacggtaatcttaagtgtttgcgacaacgctaagcag 728
||||||||||||||||| ||||| | | |||||||||||||||| |||||||||||||||
Sbjct: 2855 tccaacttattaatattttctcgtaggttaatcttaagtgtttgtgacaacgctaagcag 2796
Query: 729 tttagaacgtcccaatccacaactaacagtcttttttcatctttcaattcataaagtcta 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2795 tttagaacgtcccaatccacaactaacagtcttttttcatctttcaattcataaagtcta 2736
Query: 789 ttctgaatcgacaaatcgaacacattaagtttcgccaaggcgggcgatattatcaattta 848
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 2735 ttctgaatcgacaaatcgaacacattaagtttcgccaaggc-ggtgatattatcaatttt 2677
Query: 849 ttggtttattcagtcgngaaatatattccagatataatatcgat-aatcaccgatgaagc 907
||||||| | |||||| |||||||||||||||||||| || ||| |||||||||||||||
Sbjct: 2676 ttggtttttccagtcgtgaaatatattccagatataaaattgataaatcaccgatgaagc 2617
Query: 908 gat 910
|||
Sbjct: 2616 gat 2614
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6627
Number of Sequences: 1807
Number of extensions: 6627
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)