BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC06FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1595 1661 0.0
>3x_Contig1595
Length = 10795
Score = 1661 bits (838), Expect = 0.0
Identities = 876/884 (99%), Gaps = 4/884 (0%)
Strand = Plus / Minus
Query: 85 cttcggcaccacctggcatcaaagaaggaccgtaacgagcaccttcttcaccaccagaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4673 cttcggcaccacctggcatcaaagaaggaccgtaacgagcaccttcttcaccaccagaaa 4614
Query: 145 caccagaaccaacaaagtagattcccttttccttcaattcatcgtaacgtctgttagaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4613 caccagaaccaacaaagtagattcccttttccttcaattcatcgtaacgtctgttagaat 4554
Query: 205 ctgggaaatgagagttaccaccatcgatgataatgtctcccttttccaaaaatggcaaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4553 ctgggaaatgagagttaccaccatcgatgataatgtctcccttttccaaaaatggcaaca 4494
Query: 265 attgttgaatgaaagcatccacagcatcaccagccttgaccaaaagaatgattcttcttg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4493 attgttgaatgaaagcatccacagcatcaccagccttgaccaaaagaatgattcttcttg 4434
Query: 325 gtctcttcaagttacggcacaattcttccacagaatgagcaccaatgatagatttaccct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4433 gtctcttcaagttacggcacaattcttccacagaatgagcaccaatgatagatttaccct 4374
Query: 385 ttgcctcgtttgctaagaaatgatcaaccttagaaactgttctgttataagcaacaacag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4373 ttgcctcgtttgctaagaaatgatcaaccttagaaactgttctgttataagcaacaacag 4314
Query: 445 tgaaaccgtggtcagcagcgttcaagatcaagttttgacccataacggccaaaccaatca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4313 tgaaaccgtggtcagcagcgttcaagatcaagttttgacccataacggccaaaccaatca 4254
Query: 505 aaccaatatcaccggcaggttcagacatttttcttttttgttttcttcttgtgtgcttgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4253 aaccaatatcaccggcaggttcagacatttttcttttttgttttcttcttgtgtgcttgt 4194
Query: 565 ctagttatagaaacttgtatgtagcaaaaagactattagtaacagttaattctttcctgg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4193 ctagttatagaaacttgtatgtagcaaaaagactattagtaacagttaattctttcctgg 4134
Query: 625 taaaaaacacaacacagagagagaatagaggtacgttagtcgattcaattcaattcaatt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4133 taaaaaacacaacacagagagagaatagaggtacgttagtcgattcaattcaattcaatt 4074
Query: 685 cctaccaccaattgaaacaaaacttagagggtcaattaaatacataaaacctgtgtatta 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4073 cctaccaccaattgaaacaaaacttagagggtcaattaaatacataaaacctgtgtatta 4014
Query: 745 aaatcatcctgagcaaggaaagaaggttctctatatgaattaattgttcctttatatatg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4013 aaatcatcctgagcaaggaaagaaggttctctatatgaattaattgttcctttatatatg 3954
Query: 805 aaaaccattttntttttataattttcccggttttgagtaacaagaaagcgga-gttatta 863
||||||||||| |||| | ||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 3953 aaaaccatttttttttcaaaattttcccggttttgagtaacaagaa-gcggaagttatta 3895
Query: 864 tgaagcacatgaagcatggtgccaaccatgcttcatacgttggttcaagggtcgatattg 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 tgaagcacatgaagcatggtgccaaccatgcttcatacgttggttcaagggtcgatattg 3835
Query: 924 aaccattanatggcagctatttgctgccatct-aaacctgatct 966
|||||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 3834 aaccattagatggcagcta-ttgctgccatctaaaacctgatct 3792
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8934
Number of Sequences: 1807
Number of extensions: 8934
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)