BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC10FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1437 0.0
>3x_Contig1488
Length = 9807
Score = 1437 bits (725), Expect = 0.0
Identities = 829/855 (96%), Gaps = 7/855 (0%)
Strand = Plus / Plus
Query: 87 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttcaaaaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5197 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttcaaaaag 5256
Query: 147 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5257 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 5316
Query: 207 tgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaatgctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5317 tgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaatgctt 5376
Query: 267 tctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaattt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5377 tctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaattt 5436
Query: 327 ttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437 ttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatga 5496
Query: 387 tacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5497 tacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagtt 5556
Query: 447 aacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 aacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaata 5616
Query: 507 tgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacggat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 tgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacggat 5676
Query: 567 gaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 gaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcagt 5736
Query: 627 tttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctctgatc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5737 tttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctctgatc 5796
Query: 687 tgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacctccaat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5797 tgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacctccaat 5856
Query: 747 atttcttcgaa-gtcttttggcacatcgccaagatccgaaa-atcaattcttgcattggg 804
| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct: 5857 a-ttcttcgaaggtcttttggcacatcgccaagatccgaaatatcaattctagcatgggt 5915
Query: 805 taaatgtctactgactaacttgaaatc-tttcccaattgaacatacacatctgnaacatt 863
|||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||
Sbjct: 5916 aaaatgtctactgactaacttgaaatcattacccaattgaacatacacatcggaaacatt 5975
Query: 864 acccctcggtacttttgcctttggacatttgcgt-aaaattttgnatagttggtttaatt 922
| | ||||||| |||||| |||||| |||||| | ||||| |||||| ||||| ||
Sbjct: 5976 a-cgctcggtaactttgcccttggaccattgcgtcagaatttgtaatagtt-gtttagtt 6033
Query: 923 gaaatcattagtttc 937
||||||| |||||||
Sbjct: 6034 gaaatcaatagtttc 6048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6505
Number of Sequences: 1807
Number of extensions: 6505
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)