BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC11FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1715 1683 0.0
>3x_Contig1715
Length = 16241
Score = 1683 bits (849), Expect = 0.0
Identities = 879/886 (99%), Gaps = 3/886 (0%)
Strand = Plus / Minus
Query: 86 catcaagaacgttgccgccgccgccgggacaacaaaatggctcgttgccccagcatacag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4337 catcaagaacgttgccgccgccgccgggacaacaaaatggctcgttgccccagcatacag 4278
Query: 146 aggaagaaccagcctccaatagttcagaaagtgcaccacctgccatgagaatgttacccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277 aggaagaaccagcctccaatagttcagaaagtgcaccacctgccatgagaatgttacccc 4218
Query: 206 tagcagatttaccttctcctccacagaggactgattctcataccaccacatccgagcaac 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4217 tagcagatttacctcctcctccacagaggactgattctcataccaccacatccgagcaac 4158
Query: 266 cggcagttccaagtagaacttttgatccacctccaagatattccactaatgaaactattc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4157 cggcagttccaagtagaacttttgatccacctccaagatattccactaatgaaactattc 4098
Query: 326 ctccaacttataatattgatgaagacattcaaacggcacataagaaaccgcctccaaaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4097 ctccaacttataatattgatgaagacattcaaacggcacataagaaaccgcctccaaaag 4038
Query: 386 tgccaaaaaagaaggtatcattaagggcaggaaataaaccacctgtccccaagaaaaagg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4037 tgccaaaaaagaaggtatcattaagggcaggaaataaaccacctgtccccaagaaaaagg 3978
Query: 446 ctagtttgtccggtacagccactcatgaacataacgagtcagcccgcacatcgttaacgc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3977 ctagtttgtccggtacagccactcatgaacataacgagtcagcccgcacatcgttaacgc 3918
Query: 506 aagaaactaataacagtattgatgatgacgatgatgacgattctggagaaggtaattctt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3917 aagaaactaataacagtattgatgatgacgatgatgacgattctggagaaggtaattctt 3858
Query: 566 tcaggaagtatttgaggcatgtagttcctgcagaaagggatcatattcataagtccaaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3857 tcaggaagtatttgaggcatgtagttcctgcagaaagggatcatattcataagtccaaat 3798
Query: 626 aactttaaacacattagtggcatttactcgcatcgcaaaaaaaaataaagagttttataa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3797 aactttaaacacattagtggcatttactcgcatcgcaaaaaaaaataaagagttttataa 3738
Query: 686 acagtcatacaccgagacagcatacttaccactgaagtcccgttaagggctcaaaaacgc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3737 acagtcatacaccgagacagcatacttaccactgaagtcccgttaagggctcaaaaacgc 3678
Query: 746 ggctgcaaattatataattatttatagatagggactaaagaacacgcattatcattattc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3677 ggctgcaaattatataattatttatagatagggactaaagaacacgcattatcattattc 3618
Query: 806 tttttagtgttttacatttcatcttatttatca-ttaagctattatttcacaggatggca 864
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 3617 tttttagtgttttacatttcatctta-ttatcatttaagctattatttcacaggatggca 3559
Query: 865 ttc-acatncactactgtatacacatgtacgaatgatcatcgntttatattaatggatnt 923
||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 3558 ttcaacatccactactgtatacacatgtacgaatgatcatcgttttatattaatggattt 3499
Query: 924 acacagcatttgtaaagctatttgcagtaagagcgttgtagcagca 969
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3498 acacagcatttgtaaagctatttgcagtaagagcgttgtagcagca 3453
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7113
Number of Sequences: 1807
Number of extensions: 7113
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)