BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC11RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1027 1626 0.0
>3x_Contig1027
Length = 4522
Score = 1626 bits (820), Expect = 0.0
Identities = 857/867 (98%), Gaps = 2/867 (0%)
Strand = Plus / Minus
Query: 45 gctttaccggcattgttaatcaatagatcgatatccttgaattcttccggcaagttatca 104
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 1797 gctttaccggcattgttaatcaaaatatcgatatccttgaattcttccggcaagttatca 1738
Query: 105 atgaaaggttgaatcttctcagtttcagtgacgtccaattgaccgatatatactttagct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 atgaaaggttgaatcttctcagtttcagtgacgtccaattgaccgatatatactttagct 1678
Query: 165 tgtgggtattcagcattgattttttccttcaattcttccaacttagccaacctttttgct 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1677 tgtgggtattcagcattgattttttccttcaattcttccaacttagccaaccttcttgct 1618
Query: 225 gctaagatcaatttgacattaccgttagcagcatctatatattccaatgctgtggcttga 284
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1617 gctaagatcaatttgacattaccgttagcagcatctagatattccaatgctgtggcttga 1558
Query: 285 ccaatacctgcagaagcaccggtaatgaaaattgtcttgttttgcaatctttcagcagcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 ccaatacctgcagaagcaccggtaatgaaaattgtcttgttttgcaatctttcagcagcc 1498
Query: 345 tttctaccttgagacatgattaacgagtattgatgtgtattgggctattatatatagaat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 tttctaccttgagacatgattaacgagtattgatgtgtattgggctattatatatagaat 1438
Query: 405 gcgacagcactaagcgcagcttacagggcactatctttccagaattgaattcgagcaatt 464
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 gcgacag-actaagcgcag-ttacagggcactatctttccagaattgaattcgagcaatt 1380
Query: 465 gcttttagctaataaaggttgtaagtgaaaaaaggaagatcaaaggttcttaaattatcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 gcttttagctaataaaggttgtaagtgaaaaaaggaagatcaaaggttcttaaattatcc 1320
Query: 525 tcgaactgatttgaactttgtatttatatatgcagtacgtgaggtttgaaatacaagatc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 tcgaactgatttgaactttgtatttatatatgcagtacgtgaggtttgaaatacaagatc 1260
Query: 585 agccaagaataagggtaaataatacaccgcttacggttttcgctatcaagagcctgaaga 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 agccaagaataagggtaaataatacaccgcttacggttttcgctatcaagagcctgaaga 1200
Query: 645 cttcgattccagctgagtccaatatcaactgtatcgtccaggactaatgacaaaaagctg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 cttcgattccagctgagtccaatatcaactgtatcgtccaggactaatgacaaaaagctg 1140
Query: 705 atctagtcacaatagctaaaggggaaaaagactttcaaaacctttatctaatgcggattt 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 atctagtcacaatagctaaaggggaaaaagactttcaaaacctttatctaatgcggattt 1080
Query: 765 cgatatcagaatttgactcgaacactttgaagtcacctcggaataattcttcaagtcatt 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 cgatatcagaatttgactcgaacactttgaagtcacctcggaataattcttcaagtcatt 1020
Query: 825 atacgtanactatctgtagactgtggaattcgagcgccgtacattgagagcgtagtcctt 884
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 atacgtaaactatctgaggactgtggaattcgagcgccgtacattgagagcgtagtcctt 960
Query: 885 atgaccgtctgttagtggctgcaaaac 911
| |||||||||||||||||||||||||
Sbjct: 959 aggaccgtctgttagtggctgcaaaac 933
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7385
Number of Sequences: 1807
Number of extensions: 7385
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)