BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZC12RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1580 0.0
>3x_Contig1652
Length = 14842
Score = 1580 bits (797), Expect = 0.0
Identities = 882/905 (97%), Gaps = 4/905 (0%)
Strand = Plus / Minus
Query: 43 cttttaaacctacaa-gagaaa-ataacgcatttcaatcaacaaatggacgaatagaaaa 100
||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||
Sbjct: 5385 cttttaaacctacaaagagaaacagaacgcatttcaatcaacaactggacgaatagaaaa 5326
Query: 101 gccattgaagctttcggtagtgaattagccaagtgcaacggtaatccaaagacttcaaag 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5325 gccattgaagctttcggtagtgaattagccaagtgcaacggtaatccaaagacttcaaag 5266
Query: 161 aatcccgaaccggttactgtcagtgacacattcgcagaaatcctaagacaagctttgatc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5265 aatcccgaaccggttactgtcagtgacacattcgcagaaatcctaagacaagcagtgatc 5206
Query: 221 gcagagagcgagccggtaaaagaagagaccgaagacattatatgcaaatgcagaaataca 280
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 5205 gcagagagcgagccggtaaaagaagagaccgaagacagca-atgcaaatgcagaaataca 5147
Query: 281 gccaaaaactatacaagacgaaaattccgcatgaattgtgtccgcctgtatagaatatat 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5146 gccaaaaactatacaagacgaaaattccgcatgaattgtgtccgcctgtatagaatatat 5087
Query: 341 atatatatatgtatatagtttcataacgaaccgattatcaattgtactataaaaccgtca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5086 atatatatatgtatatagtttcataacgaaccgattatcaattgtactataaaaccgtca 5027
Query: 401 gccaacttcatcattaatcacaaaatacgactctcattaaacttcaactttctttttttc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 gccaacttcatcattaatcacaaaatacgactctcattaaacttcaactttctttttttc 4967
Query: 461 ctaaagtctgaaaagtgtaaaagttaaattcaatcaagatgagctagtttataagtctga 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4966 ctaaagtctgaaaagtgtaaaagttaaattcaatcaagatgagctagtttataagtctga 4907
Query: 521 actgagttgaacacagtcgcagagatctttgtctcgcagttctccgttgttttcatacta 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4906 actgagttgaacacagtcgcagagatctttgtctcgcagttctccgttgttttcatacta 4847
Query: 581 ccctgattacgattctcaagcttaacggatctcgataattgtttcattgtctaacttgtg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4846 ccctgattacgattctcaagcttaacggatctcgataattgtttcattgtctaacttgtg 4787
Query: 641 tagagagcaagttattgaaaaagtttaggagagaccgaaaagaggaaatatttaacaatg 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4786 tagagagcaagttattgaaaaagtttaggagagaccgaaaagaggaaatatttaacaatg 4727
Query: 701 ctttctagtataagaccgggtaccgtggttctatctcgtactttcaagcagagcttggct 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4726 ctttctagtataagaccgggtaccgtggttctatctcgtactttcaagcagagcttggct 4667
Query: 761 agctataggggtgttactgctgttagtttgtattctacaaataattctgcacaaaagtcc 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4666 agctataggggtgttactgctgttagtttgtattctacaaataattctgcacaaaagtcc 4607
Query: 821 gattcaaccaaagaaaccacatccactgtaaagggccaaagcgttgcaccaaaatgagtt 880
|||||||||||||||||||||||||||| ||||||| |||||||||||||| || |||
Sbjct: 4606 gattcaaccaaagaaaccacatccactgaaaagggcaaaagcgttgcaccagaagacgtt 4547
Query: 881 aggactaagagacgtgaa-tattcaggtcccaggacgaatctgcatcatattaactttca 939
|| ||||||||||||||| ||| ||| ||| || ||||||||||||||||| ||||| ||
Sbjct: 4546 agaactaagagacgtgaattatccagttccaagtacgaatctgcatcatatcaacttcca 4487
Query: 940 aaatg 944
|||||
Sbjct: 4486 aaatg 4482
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,572
Number of Sequences: 1807
Number of extensions: 11572
Number of successful extensions: 1537
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)