BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD01FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1255 1491 0.0
3x_Contig1806 387 e-107
>3x_Contig1255
Length = 5009
Score = 1491 bits (752), Expect = 0.0
Identities = 846/871 (97%), Gaps = 6/871 (0%)
Strand = Plus / Plus
Query: 89 ctgcaatctccagacaaatttgggctttcgctcgcgatgatgggttaccattttcgtcgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 ctgcaatctccagacaaatttgggctttcgctcgcgatgatgggttaccattttcgtcgt 1449
Query: 149 ggataaaggttgttaatgttaagttgtcgtccccattaagagcaacttgggtaggcgcag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 ggataaaggttgttaatgttaagttgtcgtccccattaagagcaacttgggtaggcgcag 1509
Query: 209 gcgtcgccctgtctattggatgtctatgtttgattggcccagttgcttcttcagctttat 268
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 gcgtcgccctggctattggatgtctatgtttgattggcccagttgcttcttcagctttat 1569
Query: 269 tctcattgtacatctctgctaactacttctcatggatgcttccaaacttgctaagaatga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 tctcattgtacatctctgctaactacttctcatggatgcttccaaacttgctaagaatga 1629
Query: 329 cttacggtaaagatgtgtttaccccgggtgcatttttcatggggaagtacctctctccag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 cttacggtaaagatgtgtttaccccgggtgcatttttcatggggaagtacctctctccag 1689
Query: 389 ttgtaaattggatttccatcatctttgaacttttcatgatactactagtcttctttccaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 ttgtaaattggatttccatcatctttgaacttttcatgatactactagtcttctttccaa 1749
Query: 449 ctgaacagcatggtataactccagacactatgaactacagtgttgttttcattggtgcag 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1750 ctgaacagcatggtataactccagacactatgaactacagtgttgttttcattggtgcag 1809
Query: 509 tatggttcttggcaacaatttattatttcatttacaagcataagttctataaaggtccaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 tatggttcttggcaacaatttattatttcatttacaagcataagttctataaaggtccaa 1869
Query: 569 aatcaaacttgacagacgaggaatacgaggaaaacgtcggtcaagacgttcttgacgcta 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 aatcaaacttgacagacgaggaatacgaggaaaacgtcggtcaagacgttcttgacgcta 1929
Query: 629 tcttatctaaaagccaggattgggacanaacagaatagacttctgtggttcccaaaaatt 688
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1930 tcttatctaaaagccaggattgggacaaaacagaatagacttctgtggttcccaaaaatt 1989
Query: 689 gtatgggcatttctagccctccatttatgggagtaaatatcaagtataaggcccaagccc 748
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1990 gtatgggcatttctagccctccatttatgggagtaaatatcaagtataagg-ccaaggcc 2048
Query: 749 gccat-aattangctaaactctactactttgtccacatataattatacattgtttgaata 807
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2049 cccataaattaggctaaactctactactttgtccacatataattatacattgtttgaata 2108
Query: 808 ctaacttactctaaacccttg-aacacttgctgncgtaattcttgacgaacttacttnca 866
|||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| ||
Sbjct: 2109 ctaactcactctaaacccttgaaacacttgctgcgtaaattcttggcgaacttacttcca 2168
Query: 867 -ctttatagaacttt-ncacangatcgatccacatttaagtttgttttctgcttgaaaaa 924
||| |||||||||| |||| |||||||||||||| |||||||||||| || ||||||
Sbjct: 2169 gcttcatagaactttcgcaca-gatcgatccacattaaagtttgttttcgcctcgaaaaa 2227
Query: 925 taccctttacgggacttctcgagactttagt 955
|||||||||||| ||||||||||||||||||
Sbjct: 2228 taccctttacggaacttctcgagactttagt 2258
>3x_Contig1806
Length = 53694
Score = 387 bits (195), Expect = e-107
Identities = 459/547 (83%)
Strand = Plus / Minus
Query: 89 ctgcaatctccagacaaatttgggctttcgctcgcgatgatgggttaccattttcgtcgt 148
|||| ||||||||||||||||||||||| || || |||||||| ||||| || || || |
Sbjct: 42887 ctgctatctccagacaaatttgggcttttgcccgtgatgatggattaccgttctcttcct 42828
Query: 149 ggataaaggttgttaatgttaagttgtcgtccccattaagagcaacttgggtaggcgcag 208
|||| || || || ||| | ||| | ||||| ||||| |||||||| ||||| ||||| |
Sbjct: 42827 ggatcaaagtcgtcaatatcaagctatcgtctccattgagagcaacctgggtcggcgctg 42768
Query: 209 gcgtcgccctgtctattggatgtctatgtttgattggcccagttgcttcttcagctttat 268
| | ||| || | ||||| ||| | || |||||||||||||| || |||||||| ||||
Sbjct: 42767 gtgccgctttggccattggttgtttgtgcttgattggcccagtagcatcttcagcattat 42708
Query: 269 tctcattgtacatctctgctaactacttctcatggatgcttccaaacttgctaagaatga 328
|||| ||| | ||||| |||||||| || |||||| ||||||||||| | |||||||
Sbjct: 42707 tctccttggctgtttctgcgaactacttttcctggatggttccaaacttgttgagaatga 42648
Query: 329 cttacggtaaagatgtgtttaccccgggtgcatttttcatggggaagtacctctctccag 388
|||| || |||||||| || ||||||||||| ||||||||||||||||| || |||||||
Sbjct: 42647 cttatgggaaagatgtattcaccccgggtgcttttttcatggggaagtatctttctccag 42588
Query: 389 ttgtaaattggatttccatcatctttgaacttttcatgatactactagtcttctttccaa 448
| |||||||||||||| ||| | |||||| ||||||||||| || |||| ||||| |||
Sbjct: 42587 tggtaaattggatttctatcgtatttgaaattttcatgatattattagttttcttcccag 42528
Query: 449 ctgaacagcatggtataactccagacactatgaactacagtgttgttttcattggtgcag 508
| || ||||| || || || |||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 42527 cggatcagcacggcatcaccccagacacgatgaactacagtgtagttttcattggcgcag 42468
Query: 509 tatggttcttggcaacaatttattatttcatttacaagcataagttctataaaggtccaa 568
||||| ||||| | || ||||| ||| || |||||||| | |||||||||| |||||||
Sbjct: 42467 tatgggtcttgcctacgatttactatctcgtttacaagtacaagttctatagtggtccaa 42408
Query: 569 aatcaaacttgacagacgaggaatacgaggaaaacgtcggtcaagacgttcttgacgcta 628
||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct: 42407 aatcaaacttgacagacgaagaatatgaggagaaggtcggtcaagacgttcttgacgcta 42348
Query: 629 tcttatc 635
|||||||
Sbjct: 42347 tcttatc 42341
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5807
Number of Sequences: 1807
Number of extensions: 5807
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)