BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD01RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig588 1427 0.0
>3x_Contig588
Length = 2342
Score = 1427 bits (720), Expect = 0.0
Identities = 767/781 (98%), Gaps = 2/781 (0%)
Strand = Plus / Plus
Query: 49 gattttgattttgatttggtttgagtttgagcgcttgcacttgaaccatttgtagcggaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 gattttgattttgatttggtttgagtttgagcgcttgcacttgaaccatttgtagcggaa 1523
Query: 109 tgtaattggtgtgctgatgagatcgatgattttccacttgtagcagtcttcagtccagaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 tgtaattggtgtgctgatgagatcgatgattttccacttgtagcagtcttcagtccagaa 1583
Query: 169 ttggattttctatttgttcctttcccgtttgttgtagaggtcggatgtacttttgcacta 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 ttggattttctatttgttcctttcccgtttgttgtagaggtcggatgtacttttgcacta 1643
Query: 229 tacgagtatgatgtagaaggccgttttgggctggagacggatggcagtttctcgctcttg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1644 tacgagtatgatgtagaaggccgttttgggctggagacggatggcagtttctcgctcttg 1703
Query: 289 actcttctaactatgctcgaagaatcgtcatcgcctcccaataatgatttcactttatac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 actcttctaactatgctcgaagaatcgtcatcgcctcccaataatgatttcactttatac 1763
Query: 349 attcctggctcatcggcaaaataaactctagatgaccgtctactactcatagtcgagttt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 attcctggctcatcggcaaaataaactctagatgaccgtctactactcatagtcgagttt 1823
Query: 409 ctggaagctactggaccaaaactgttattcttgaacctagttggctctggtggaacgtat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 ctggaagctactggaccaaaactgttattcttgaacctagttggctctggtggaacgtat 1883
Query: 469 cccaatctttctatgtgttgcttcctccgttgcgcttcgggcgacgtggggaaatagtct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 cccaatctttctatgtgttgcttcctccgttgcgcttcgggcgacgtggggaaatagtct 1943
Query: 529 gtaattcctttatctgcctcactgtctatactaaccatatcgtcatttccatgttcataa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 gtaattcctttatctgcctcactgtctatactaaccatatcgtcatttccatgttcataa 2003
Query: 589 acgtcttcaatgcccctaggtgtgtggtcattcttagagctagtacccaaaacatcgttc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 acgtcttcaatgcccctaggtgtgtggtcattcttagagctagtacccaaaacatcgttc 2063
Query: 649 agggatttgatgatacatctatcgaggaatgcanattgatcatcttttgtggaaatcgaa 708
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2064 agggatttgatgatacatctatcgaggaatgcaaattgatcatcttttgtggaaatcgaa 2123
Query: 709 acagtcttatgcatcgggtttcttgccttcaccaagatgatatggatcgattaacttata 768
||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| | |
Sbjct: 2124 acagtcttatgcatc-ggtttcttggcttcaccaagatgatatggatcgataaactcaaa 2182
Query: 769 ggggattataacagttggaaccccaagatgtcttttaaggaaaattgggcaatttaacgt 828
||| ||||||||||| ||||||| ||||||||| | |||| | |||| ||||||||||||
Sbjct: 2183 gggaattataacagtaggaacccaaagatgtctataaagg-anattgngcaatttaacgt 2241
Query: 829 t 829
|
Sbjct: 2242 t 2242
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5598
Number of Sequences: 1807
Number of extensions: 5598
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)