BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD02FM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig399 1394 0.0
>3x_Contig399
Length = 2300
Score = 1394 bits (703), Expect = 0.0
Identities = 766/782 (97%), Gaps = 5/782 (0%)
Strand = Plus / Plus
Query: 201 tgaacaagtagttgaacattttgtaagacaaaaatgagaatatcttgtgtccggccaaca 260
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaacaagtagttgaacatgacgtaagacaaaaatgagaatatcttgtgtccggccaaca 60
Query: 261 aatttctcatctccatcatcattggtacaaatgatttgtttccgaatacccagcgattat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttctcatctccatcatcattggtacaaatgatttgtttccgaatacccagcgattat 120
Query: 321 ctatgtgtttcgccataaacttaacgaaatatttttcatcgagtagtggaccgggataaa 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctatgtgtttcgccataaacttaacgaaatatttttcatcgagtagtggaccgggataaa 180
Query: 381 cagcaggtgctaatgcaactaaattatctaatttatcactcaatctgaactctgtatttt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cagcaggtgctaatgcaactaaattatctaatttatcactcaatctgaactctgtatttt 240
Query: 441 tgtagatctcttcaccatttacaagtcccataaaagcttgtgtggtaccctgggaatggg 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtagatctcttcaccatttacaagtcccataaaagcttgtgtggtaccctgggaatggg 300
Query: 501 ccactaaggtaagcttctcaaacttattttgctttttttggaggacactttcaataaggg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccactaaggtaagcttctcaaacttattttgctttttttggaggacactttcaataaggg 360
Query: 561 cttcaaggtcatatctggtcatagaatctagatcccaatcccattcaccgttgggggtca 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttcaaggtcatatctggtcatagaatctagatcccaatcccattcaccgttgggggtca 420
Query: 621 gcttttctctatcccatttagagttgaatccacaacgattatttcctaaccacacatcgt 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcttttctctatcccatttagagttgaatccacaacgattatttcctaaccacacatcgt 480
Query: 681 agcccgaatcgtgcatgtaataagctaatgacttcctgccactagacgcaaaagaaccac 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agcccgaatcgtgcatgtaataagctaatgacttcctgccactagacgcaaaagaaccac 540
Query: 741 tactttgtaaaagtccatgtaacattaaaacagggtacttcgtgtttgtcttcccctcgt 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tactttgtaaaagtccatgtaacattaaaacagggtacttcgtgtttgtcttcccctcgt 600
Query: 801 tctcgtttctcaaatgccaaagctcttaaatgaagccatcctttgttgntacttcatatt 860
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 601 tctcgtttctcaaatgccaaagctctaaaatgaagccatcctttgttgttacttcatatt 660
Query: 861 catcgatgataatatttgtattgggaantagt-atactgnagatttgnaactagcttcan 919
|||||||||||||| |||||||||||| |||| |||||| ||||||| |||||||||||
Sbjct: 661 catcgatgataata-ttgtattgggaa-tagtaatactggagatttggaactagcttcaa 718
Query: 920 atcttcagcagacaagatattcgnaaatgggattg-aatcagagtctttaagttccgttc 978
||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 719 atcttcagcagacaagata-tcggaaaatggattgaaatcagagtctttaagttccgttc 777
Query: 979 tt 980
||
Sbjct: 778 tt 779
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6268
Number of Sequences: 1807
Number of extensions: 6268
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)