BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1671 0.0
>3x_Contig1794
Length = 36744
Score = 1671 bits (843), Expect = 0.0
Identities = 869/877 (99%), Gaps = 1/877 (0%)
Strand = Plus / Minus
Query: 54 cttaagaagaataaagtgaatatttcctcaatgacgttcgattcagaggcaaaggaatct 113
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 19614 cttaagaagaataaagtgaatacttcctcaatgacgttcgattcagaggcaaaggaatct 19555
Query: 114 cagacacaacatggttcaatgacaaggatactcatgcaaaggttagaagagttaaatgag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19554 cagacacaacatggttcaatgacaaggatactcatgcaaaggttagaagagttaaatgag 19495
Query: 174 ttatccgataagaaatcaagcgggtcggtcaaagaacgagtgtatggttatttttttagt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 19494 ttatccgataagaaatcaagcgggtcggtcaaagaacgagtgtatggttatttcttcagt 19435
Query: 234 gacaattttatcaaatgtgtaaaatggacgctctggagacaggtggtgatgttaatcttc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19434 gacaattttatcaaatgtgtaaaatggacgctctggagacaggtggtgatgttaatcttc 19375
Query: 294 aacggtcaacattccaaatgtctaaagccattacataaatcgatcatcatcatgttgtca 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19374 aacggtcaacattccaaatgtctaaagccattacataaatcgatcatcatcatgttgtca 19315
Query: 354 ttcactttgctgagcgacccacaacatttagatattaactgggagctactcaaatacttg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19314 ttcactttgctgagcgacccacaacatttagatattaactgggagctactcaaatacttg 19255
Query: 414 gggagatcaacgttatctcaagaacttggtaggataccacattatcaaaaaccaatcatt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19254 gggagatcaacgttatctcaagaacttggtaggataccacattatcaaaaaccaatcatt 19195
Query: 474 ttcgctgcccttagtctctcatatctaaccaggaacccaattgcctaataaacagactga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19194 ttcgctgcccttagtctctcatatctaaccaggaacccaattgcctaataaacagactga 19135
Query: 534 tttgttcctagtttgatttgtatcaatatgcgtgtgttccttttctaattagagtctttt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19134 tttgttcctagtttgatttgtatcaatatgcgtgtgttccttttctaattagagtctttt 19075
Query: 594 cgtgtcggtgtgtatataaatgttacgcatatgttgatctatacacagatcccgtataca 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19074 cgtgtcggtgtgtatataaatgttacgcatatgttgatctatacacagatcccgtataca 19015
Query: 654 tacgtatatatatatatatcacgattcgtacgtttctaacgttaagagcacttatttttg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19014 tacgtatatatatatatatcacgattcgtacgtttctaacgttaagagcacttatttttg 18955
Query: 714 accagtggcgcctggagcggatccatttcccttcaacctttgtaggatttccttgaattt 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18954 accagtggcgcctggagcggatccatttcccttcaacctttgtaggatttccttgaattt 18895
Query: 774 ggatctatctctgccatctacaatgtcagcatccttcaagttgatcaactgaagagcttt 833
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 18894 ggatctatctctgccatctacaatgtcagcatcctccaagttgatcaactgaagagcttt 18835
Query: 834 gtcccaaacagtcaaatcttgagaggcanaagcatgagtcttancaaggaattcttcagc 893
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 18834 gtcccaaacagtcaaatcttgagaggcaaaagcatgagtcttagcaaggaattcttcagc 18775
Query: 894 ttctttttgagtttgatcaattccttg-tgcttctta 929
|||||||||||||||||||||||| || |||||||||
Sbjct: 18774 ttctttttgagtttgatcaattccctgttgcttctta 18738
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,629
Number of Sequences: 1807
Number of extensions: 10629
Number of successful extensions: 1041
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)