BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD03FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1444 1598 0.0
>3x_Contig1444
Length = 7580
Score = 1598 bits (806), Expect = 0.0
Identities = 861/876 (98%), Gaps = 3/876 (0%)
Strand = Plus / Minus
Query: 86 aacatcgtctatgatctcatctgcgttcactttgtgtaccgactttctgatggggccaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3843 aacatcgtctatgatctcatctgcgttcactttgtgtaccgactttctgatggggccaaa 3784
Query: 146 ctcgctttcaaggtcatccattcgtactaataaattgaattgtggattaatactaactgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3783 ctcgctttcaaggtcatccattcgtactaataaattgaattgtggattaatactaactgt 3724
Query: 206 aatcgaatgagattattttgacagtgttagaacatggactttggtttatgaattatctaa 265
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3723 aatcgaatgagattagtttgacagtgttagaacatggactttggtttatgaattatctaa 3664
Query: 266 ggtaccgttctactactttggatgtattcattgttgttgatttagttttatggttattaa 325
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3663 ggtaccgttctactactttggatgtattcattgttgttgatttagttttaaggttattaa 3604
Query: 326 atgtttagtaaggttatccgaaaataatgaattattactagtcaggtatagtgaattgga 385
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603 atgtttagtaaggttacccgaaaataatgaattattactagtcaggtatagtgaattgga 3544
Query: 386 tgcaccatagataagaacaacggaacttcttccaatacttgattcaaaacattatcttcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3543 tgcaccatagataagaacaacggaacttcttccaatacttgattcaaaacattatcttcc 3484
Query: 446 gaactggtagcaacaggacataaaagacgtgactcatacgaattaatcccatttaaacaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3483 gaactggtagcaacaggacataaaagacgtgactcatacgaattaatcccatttaaacaa 3424
Query: 506 tgtctaagtaataatcatgtcagaacacacactctttgttcgcaatgactttatcttgtc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3423 tgtctaagtaataatcatgtcagaacacacactctttgttcgcaatgactttatcttgtc 3364
Query: 566 tttctttacatctgtggcacgaaattgataacaatatgacaaaaaagaataaacaaagat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3363 tttctttacatctgtggcacgaaattgataacaatatgacaaaaaagaataaacaaagat 3304
Query: 626 aggaccgacagaaaagggaaaatctttgttattggtaactctgacaccttctcatccaaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3303 aggaccgacagaaaagggaaaatctttgttattggtaactctgacaccttctcatccaaa 3244
Query: 686 cttacattttgtctcgtttgtcaactacccccttgtgtttaatcaggtatggaaggagtg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3243 cttacattttgtctcgtttgtcaactacccccttgtgtttaatcaggtatggaaggagtg 3184
Query: 746 acgttgaccacacatgaattatgcagacgctgtgacttttagtataagagttgtgagata 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3183 acgttgaccacacatgaattatgcagacgctgtgacttttagtataagagttgtgagata 3124
Query: 806 ttactttttattcgagtatatatgtncgaatat-tatatat-tatatattgaactangtc 863
|||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||| |||
Sbjct: 3123 ttacttcttattcgagtatatatgtacgaatatgtatatatatatatattgaactaggtc 3064
Query: 864 aactagaacattttaaataattaat-attaatactactattattattactcttatcattc 922
||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3063 aactagaacatttaaataaattaataattaatactactattattattactcttatcattc 3004
Query: 923 ttattcttattatgtttgggaagaaaaaagaatggt 958
||||||||||||||||||||| ||||||||||||
Sbjct: 3003 ttattcttattatgtttgggagagaaaaagaatggt 2968
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8306
Number of Sequences: 1807
Number of extensions: 8306
Number of successful extensions: 121
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)