BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD03RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig983 1641 0.0
>3x_Contig983
Length = 4410
Score = 1641 bits (828), Expect = 0.0
Identities = 873/887 (98%), Gaps = 1/887 (0%)
Strand = Plus / Minus
Query: 50 ctttactaatcaccctaacgtatttcctctaaaaatggccattttggtagatgaggaatc 109
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1552 ctttactaatcaccctaacgtacaacctctaaaaatggccattttggtagatgaggaatc 1493
Query: 110 aaggaacgttactttcttgtacaaacttgtagatgggaaaagtgatggctcctttggtat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 aaggaacgttactttcttgtacaaacttgtagatgggaaaagtgatggctcctttggtat 1433
Query: 170 gcatgtagcgtcaatgtgtggaattcctaggtcagtcgttgataatgcgtctattgttgc 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1432 gcatgtagcgtcaatgtgtggaattcctaggtcagtcgttgataatgcgtctattgcagc 1373
Query: 230 agaaaacttggagcatacttccaaactgatcaaagaacggaagaatttacaccagagcat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 agaaaacttggagcatacttccaaactgatcaaagaacggaagaatttacaccagagcat 1313
Query: 290 aaaccctgtacccctagggctacaaagtgacgtagtgcggttagtgtatggtgatggact 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 aaaccctgtacccctagggctacaaagtgacgtagtgcggttagtgtatggtgatggact 1253
Query: 350 tacaaattcgaagggaggtaccggtgaaggtgtcagagtttatgataacaacattaaaag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 tacaaattcgaagggaggtaccggtgaaggtgtcagagtttatgataacaacattaaaag 1193
Query: 410 caatgtcctaaaaagcttcatttctgtaatagacggattgacggtataaataagtaaagt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 caatgtcctaaaaagcttcatttctgtaatagacggattgacggtataaataagtaaagt 1133
Query: 470 gataaaactgtatactttttaattacaagaaataatgaataacaccaaaagtaaaattta 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 gataaaactgtatactttttaattacaagaaataatgaataacaccaaaagtaaaattta 1073
Query: 530 aagaactgataacaaatataaagatgggaactttgtgagggtttgaaataaacgataacg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 aagaactgataacaaatataaagatgggaactttgtgagggtttgaaataaacgataacg 1013
Query: 590 atgaaaagaaaaatcagaaatagtaattcttctgtttcatttttttttaaatatgaagat 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 atgaaaagaaaaatcagaaatagtaattcttctgtttcatttttttttaaatatgaagat 953
Query: 650 ttccgaatagtcatattaattaaataaaataggacctgtttgcttctatcaatgctttta 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ttccgaatagtcatattaattaaataaaataggacctgtttgcttctatcaatgctttta 893
Query: 710 atcggtaagggaatgttcataaaaatattaataatacatctaatttccgagatctttttt 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 892 atcggtaagggaatgttcataaaaatattaataatacatctaatttccgagatctttatt 833
Query: 770 tttttcgttaactaccaaccttaggggcagggtcttgatctggaacacatggaatctttt 829
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 832 ttttccgttaactaccaaccttaggggcagtgtcttgatctggaacacatggaatctttt 773
Query: 830 tattcaagtgctgtangacatgatctcttctcttggactttttaccacactttgtacaag 889
||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 772 tattcaagtgctgtaggacatgatctcttctcttgaactttttaccacactttggacaag 713
Query: 890 aatgaggcttcttacctggatggaccga-tttttatgtcttgtcaaa 935
|||||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct: 712 aatgaggcttctcacctgaatggaccgattttttatgtcttgtcaaa 666
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,286
Number of Sequences: 1807
Number of extensions: 14286
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)