BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD04FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1540 0.0
>3x_Contig1771
Length = 25932
Score = 1540 bits (777), Expect = 0.0
Identities = 848/866 (97%), Gaps = 6/866 (0%)
Strand = Plus / Minus
Query: 88 ctactcacgtagggtagagattgctcaaatattccgtaacaaattacagaagtgtttggt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8696 ctactcacgtagggtagagattgctcaaatattccgtaacaaattacagaagtgtttggt 8637
Query: 148 tcaacgagataccccaccaacagatgcagatcttgccgagtctgataaactcatgaggaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8636 tcaacgagataccccaccaacagatgcagatcttgccgagtctgataaactcatgaggaa 8577
Query: 208 aatcctatcacatactaaatcaacaccggaattctttgatttagaagcccttagggtatc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8576 aatcctatcacatactaaatcaacaccggaattctttgatttagaagcccttagggtatc 8517
Query: 268 caaattgcataaactattaaaagtcatttctagtatgcctgaattatcacagtttcacga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8516 caaattgcataaactattaaaagtcatttctagtatgcctgaattatcacagtttcacga 8457
Query: 328 atcttgtaacactatattggaagtgtgggcacctcatgttcaaaagatcaaaaaggaaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8456 atcttgtaacactatattggaagtgtgggcacctcatgttcaaaagatcaaaaaggaaaa 8397
Query: 388 actgaaactgaagggttcgctatccccatagagtggatcacaactgtcacttttaatatc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8396 actgaaactgaagggttcgctatccccatagagtggatcacaactgtcacttttaatatc 8337
Query: 448 ttcgattcataataagagcacaaaagaaccgttcaaaaggaaagcacaaacaatgcatta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8336 ttcgattcataataagagcacaaaagaaccgttcaaaaggaaagcacaaacaatgcatta 8277
Query: 508 ctgctttataacaaattcaattcaattctgacattattctcatgtaaaatctatcacatt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8276 ctgctttataacaaattcaattcaattctgacattattctcatgtaaaatctatcacatt 8217
Query: 568 aacctacataatctcatccctaccacctctccagttacctcaccgtacctattccttctt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8216 aacctacataatctcatccctaccacctctccagttacctcaccgtacctattccttctt 8157
Query: 628 ttcttggacccttcaatcataatgtatcattatttacgtttatcgctctgttccccatca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8156 ttcttggacccttcaatcataatgtatcattatttacgtttatcgctctgttccccatca 8097
Query: 688 attgttattattaacaaaattgccaaaacctttaaaatgactttaaggtagcaaaattgt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8096 attgttattattaacaaaattgccaaaacctttaaaatgactttaaggtagcaaaattgt 8037
Query: 748 gcacttcattacanacatcagacatctttcccataagctagcacattanggaaccgatat 807
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8036 gcacttcattacaaacatcagacatctttcccataagctagcacattagggaaccgatat 7977
Query: 808 tttaatatat-tttcctgtaa-tttttattgtttatcaaatacgccaagtattactttca 865
|||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 7976 tttaat-tatatttcctgtaaatttttattgtttatcaaatacgccaagtattactt-ca 7919
Query: 866 aatactnntcagttgntatgtccactaccgnntgatttgccanagcatttagtatctttg 925
| ||| ||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 7918 ataactttcaagttgttatgtccactaccgt-tgatttgccagagcatttagtatctttg 7860
Query: 926 ctttaaacatcc-aatatgttcattt 950
||| |||||||| |||||||||||||
Sbjct: 7859 cttaaaacatccaaatatgttcattt 7834
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7362
Number of Sequences: 1807
Number of extensions: 7362
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)