BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD04RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1374 1576 0.0
>3x_Contig1374
Length = 8985
Score = 1576 bits (795), Expect = 0.0
Identities = 834/842 (99%), Gaps = 4/842 (0%)
Strand = Plus / Minus
Query: 65 cacacatataaatagacacataataagtttgttcc-gat-ctcat-attcccactagctc 121
||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 6212 cacacatataaatagacacataataagtttgttccagatactcatcattcccactagctc 6153
Query: 122 ttcgtgcgggccagtgcatatctttgtcatttggcgtcatgtgacttccttggcgtcaca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6152 ttcgtgcgggccagtgcatatctttgtcatttggcgtcatgtgacttccttggcgtcaca 6093
Query: 182 ttatctaaatcgcagtttttatcaaaattcaaattgacgcgttttgaaacaagaatcaga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6092 ttatctaaatcgcagtttttatcaaaattcaaattgacgcgttttgaaacaagaatcaga 6033
Query: 242 tcaaattcgatgagtgctcgaactgacactgtcgagacaatcaacaggacaaacgccaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6032 tcaaattcgatgagtgctcgaactgacactgtcgagacaatcaacaggacaaacgccaag 5973
Query: 302 ggtttgtgacggtctctgctagtgcaatttcaactcatattaaccgctaactttgacatg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5972 ggtttgtgacggtctctgctagtgcaatttcaactcatattaaccgctaactttgacatg 5913
Query: 362 ccatccttagttgacgccgttgagcctggctcttccactgtaccatcgtcatcgactacc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5912 ccatccttagttgacgccgttgagcctggctcttccactgtaccatcgtcatcgactacc 5853
Query: 422 ccatatggaggtgacactcctccttcaaattatggacctagttcatcagatatgcaatac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5852 ccatatggaggtgacactcctccttcaaattatggacctagttcatcagatatgcaatac 5793
Query: 482 tactatcaacatctgtatccttttaagcagatatttcaatggctgaaccattcacctaaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5792 tactatcaacatctgtatccttttaagcagatatttcaatggctgaaccattcacctaaa 5733
Query: 542 ccaggccgtgatatcatcaatagagaattcgcgatggcgttcagatctggtgcatacaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5732 ccaggccgtgatatcatcaatagagaattcgcgatggcgttcagatctggtgcatacaaa 5673
Query: 602 agatataattcgttcaacagcgtacaggagttcaaagtacagatccagaaggctaatcca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672 agatataattcgttcaacagcgtacaggagttcaaagtacagatccagaaggctaatcca 5613
Query: 662 gatagatttgagatcggtgcagtgtacaataaaccgccaagggagcgcgactctttactt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5612 gatagatttgagatcggtgcagtgtacaataaaccgccaagggagcgcgactctttactt 5553
Query: 722 aagactgagatgaaaccgatggagaaagaattagttntcgatatcgatatggatgattat 781
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5552 aagactgagatgaaaccgatggagaaagaattagttttcgatatcgatatggatgattat 5493
Query: 782 gatagttatagaacatgttgttctggggcacaagtgtgttccaagtgttggcactttatt 841
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5492 gatagttatagaacatgttgttctggggcacaagtgtgtcccaagtgttggcactttatt 5433
Query: 842 -aattagctatgaaagttatcaattcatctttggaaaatgatttcggttttgatgaggtc 900
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5432 aaattagctatgaaagtaatcaattcatctttggaaaatgatttcggttttgatgagttc 5373
Query: 901 at 902
||
Sbjct: 5372 at 5371
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6098
Number of Sequences: 1807
Number of extensions: 6098
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)