BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD05FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1365 1608 0.0
>3x_Contig1365
Length = 9349
Score = 1608 bits (811), Expect = 0.0
Identities = 869/885 (98%), Gaps = 3/885 (0%)
Strand = Plus / Minus
Query: 88 tattaactgattcagctactcgcgctcatacggatacatctattgagcagaaactacaag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8493 tattaactgattcagctactcgcgctcatacggatacatctattgagcagaaactacaag 8434
Query: 148 aaatagaaagacaatatcagttgaatgttatgttgagggatagaattcagaacaccaagg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8433 aaatagaaagacaatatcagttgaatgttatgttgagggatagaattcagaacaccaagg 8374
Query: 208 aactccttacggaagtggtacaattcaagaaaaaggtgatagatcttctacgatgcgacg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8373 aactccttacggaagtggtacaattcaagaaaaaggtgatagatcttctacgatgcgacg 8314
Query: 268 ataacttgacaactgcgttgcatgaattatgggacgatctaaaacctctagatgtggctg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8313 ataacttgacaactgcgttgcatgaattatgggacgatctaaaacctctagatgtggctg 8254
Query: 328 ttaagcttattacaacaagattaaagcagatatatttggagaatgaggaattctattcga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8253 ttaagcttattacaacaagattaaagcagatatatttggagaatgaggaattctattcga 8194
Query: 388 ttgaccaagtaaacagactggtgaaaaggtataatgaattgagaaatacttcaattgtga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8193 ttgaccaagtaaacagactggtgaaaaggtataatgaattgagaaatacttcaattgtga 8134
Query: 448 gaaacggctacattgataaaaaatctcaacatattttagatgaattacacattagtgtta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8133 gaaacggctacattgataaaaaatctcaacatattttagatgaattacacattagtgtta 8074
Query: 508 attcaactcagaacaatgaagattctacaaatacctctattcgatcattgcaggaagatg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8073 attcaactcagaacaatgaagattctacaaatacctctattcgatcattgcaggaagatg 8014
Query: 568 atcctgaaatagaacatccagattggtcatcgatgcagaaggtaatataacctctgcatc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8013 atcctgaaatagaacatccagattggtcatcgatgcagaaggtaatataacctctgcatc 7954
Query: 628 tacaattctaaatggagaaaatacacgtgagctgggatcacgtatcctgatggaaattag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7953 tacaattctaaatggagaaaatacacgtgagctgggatcacgtatcctgatggaaattag 7894
Query: 688 ttaacaataaactttgacttaatattattaaacagtgatatagtaattaaataatagagg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7893 ttaacaataaactttgacttaatattattaaacagtgatatagtaattaaataatagagg 7834
Query: 748 atgaataaaactaatgacagtgccagtaccctaaaaagtaacgggaataattaaagtcga 807
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7833 atgaataaaataaatgacagtgccagtaccctaaaaagtaacgggaataattaaagtcga 7774
Query: 808 aacatgataaaataataaaaagtcgatacagtaccgaaaatgatgaacgccctagataat 867
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7773 aacatgataaaaaaataaaaagtcgatacagtaccgaaaatgatgaacgcctaggataat 7714
Query: 868 aannatatgtcatgagaaaaaatgaaatac-atgctaaagtccgcctagttga-taatag 925
|| |||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 7713 aaaataatgtaatgagaaaaaatgaaatacaatgtaaaagtccgcctagttgattaatag 7654
Query: 926 gtaaaagaaaaaagaattagcg-agtgattgatgcgaatagaata 969
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7653 gtaaaagaaaaaagaattagcgaagtgattgatgcgaatagaata 7609
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7953
Number of Sequences: 1807
Number of extensions: 7953
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)