BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC18ZD05RM1.SCF screened BAC_end
         (926 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1635                                                        1651   0.0  
3x_Contig40                                                           190   3e-48

>3x_Contig1635 
          Length = 12349

 Score = 1651 bits (833), Expect = 0.0
 Identities = 862/869 (99%), Gaps = 2/869 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tgatccatgaaggatattttgtggaaaaggtccatgaattaaccaaaattgactcatggt 107
            ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 tgatccatgaaggatattcggtggaaaaggtccatgaattaaccaaaattgactcatggt 1823

                                                                        
Query: 108  tcctattcaagtgtatgaacatagtcgacatgtataaagatttggaacaggttaatgacc 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 tcctattcaagtgtatgaacatagtcgacatgtataaagatttggaacaggttaatgacc 1883

                                                                        
Query: 168  tggaatctttggacaaagaactgctacttgaagcgaagaaactaggtttctctgatgctc 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 tggaatctttggacaaagaactgctacttgaagcgaagaaactaggtttctctgatgctc 1943

                                                                        
Query: 228  aaatcgcactatgtttgaacaagggtagtgactcaagaacctcagaattagaagttagaa 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 aaatcgcactatgtttgaacaagggtagtgactcaagaacctcagaattagaagttagaa 2003

                                                                        
Query: 288  gttacagaaaatcctttggaatcgttccgtttgtcaaacgaattgacaccctagccgcag 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 gttacagaaaatcctttggaatcgttccgtttgtcaaacgaattgacaccctagccgcag 2063

                                                                        
Query: 348  aattccctgctcaaacaaactatttatacactacttacaatgctactaagagtgatatcg 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 aattccctgctcaaacaaactatttatacactacttacaatgctactaagagtgatatcg 2123

                                                                        
Query: 408  aattcactgataatggtgttctagtgctcggctcaggtgtctacagaataggttcaagtg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 aattcactgataatggtgttctagtgctcggctcaggtgtctacagaataggttcaagtg 2183

                                                                        
Query: 468  tggaattcgattggtgtgctgttaacaccacaaaggccctcagaaaagaagggaagaaaa 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 tggaattcgattggtgtgctgttaacaccacaaaggccctcagaaaagaagggaagaaaa 2243

                                                                        
Query: 528  ctattatgataaattacaatcctgaaacggtttccacagattttgatgaagttgacagat 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 ctattatgataaattacaatcctgaaacggtttccacagattttgatgaagttgacagat 2303

                                                                        
Query: 588  tgtatttcgaagaactctctttcgagcgtgtcatggatatttacgagttggagaattctg 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 tgtatttcgaagaactctctttcgagcgtgtcatggatatttacgagttggagaattctg 2363

                                                                        
Query: 648  aaggttgtgtcatctccgttggtggtcaacttccacagaacatcgctttgaaacttcttc 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 aaggttgtgtcatctccgttggtggtcaacttccacagaacatcgctttgaaacttcttc 2423

                                                                        
Query: 708  acaatggtgctcacatattgcgtacctctcctgaagacattgacaaggctgaaaacagac 767
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2424 acaatggtgctcacatattgggtacctctcctgaagacattgacaaggctgaaaacagac 2483

                                                                        
Query: 768  acaagttctcaactattctggattctatcggcgtcaatcaaccagaatggagtgagttgt 827
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2484 acaagttctcaactattctggattctatcggcgtcaatcaaccagaatggagtgagttgt 2543

                                                                        
Query: 828  cttctgttgaagaagct-aagtattcgcttatcaagtgggatacccggtttttaattcgt 886
            ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 2544 cttctgttgaagaagctaaagtattcgctaatcaagtgggatacccgg-ttttaattcgt 2602

                                         
Query: 887  tcatcgtacgtgttgtctggtgctgctat 915
             ||||||||||||||||||||||||||||
Sbjct: 2603 ccatcgtacgtgttgtctggtgctgctat 2631


>3x_Contig40 
          Length = 946

 Score =  190 bits (96), Expect = 3e-48
 Identities = 282/344 (81%)
 Strand = Plus / Minus

                                                                       
Query: 78  tccatgaattaaccaaaattgactcatggttcctattcaagtgtatgaacatagtcgaca 137
           ||||| |||||||||||||| ||||||  ||||||||||| | ||| |||||| || |||
Sbjct: 431 tccattaattaaccaaaatttactcatttttcctattcaattttattaacatattctaca 372

                                                                       
Query: 138 tgtataaagatttggaacaggttaatgacctggaatctttggacaaagaactgctacttg 197
           | |||||| ||||  ||||  ||||| ||||  |||||||  ||||| |||| |||||| 
Sbjct: 371 tttataaatatttttaacattttaattacctttaatctttttacaaataacttctacttt 312

                                                                       
Query: 198 aagcgaagaaactaggtttctctgatgctcaaatcgcactatgtttgaacaagggtagtg 257
           || | || ||||||  ||||||| || |||||||| |||||| ||| |||||   || | 
Sbjct: 311 aatctaataaactatttttctcttattctcaaatctcactattttttaacaattttattt 252

                                                                       
Query: 258 actcaagaacctcagaattagaagttagaagttacagaaaatcctttggaatcgttccgt 317
           |||||| ||||||| ||||| || ||| || ||||| ||||||||||  |||| |||| |
Sbjct: 251 actcaataacctcataattataatttataatttacataaaatcctttttaatctttcctt 192

                                                                       
Query: 318 ttgtcaaacgaattgacaccctagccgcagaattccctgctcaaacaaactatttataca 377
           || |||||| |||| |||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 191 ttttcaaactaatttacaccctatcctcataattcccttctcaaacaaactatttataca 132

                                                       
Query: 378 ctacttacaatgctactaagagtgatatcgaattcactgataat 421
           ||||||||||| ||||||| | | ||||| |||||||| |||||
Sbjct: 131 ctacttacaattctactaatatttatatctaattcacttataat 88


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6363
Number of Sequences: 1807
Number of extensions: 6363
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)