BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD06RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1713 1699 0.0
>3x_Contig1713
Length = 18539
Score = 1699 bits (857), Expect = 0.0
Identities = 898/911 (98%), Gaps = 1/911 (0%)
Strand = Plus / Minus
Query: 51 gctttagagctttctttgaatacgtgt-acatcgacctaacgaagtatttcaccgaagct 109
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 8278 gctttagagctttctttgaatacgcattacatcgacctaacgaagtatttcaccgaagct 8219
Query: 110 tctcatgtcacggatatgattcatctgggtcatcattacgatggaaggttcttccgtggt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8218 tctcatgtcacggatatgattcatctgggtcatcattacgatggaaggttcttccgtggt 8159
Query: 170 ggattatctcatagtgaagttagagccagattggatgccattattagagcctggttgcat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8158 ggattatctcatagtgaagttagagccagattggatgccattattagagcctggttgcat 8099
Query: 230 ttcactgtttccaatgatcttactgcatggttagctcatggtactttgtacggttggctt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8098 ttcactgtttccaatgatcttactgcatggttagctcatggtactttgtacggttggctt 8039
Query: 290 tacaacggattggcgttcacttgggatggtgatcatgacgttcaaatgcctattgctgat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8038 tacaacggattggcgttcacttgggatggtgatcatgacgttcaaatgcctattgctgat 7979
Query: 350 ttaaaccgtatggcgaaaaaatttaaccaaaccgttatcgttgaggatcctactagagga 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7978 ttaaaccgtatggcgaaaaaatttaaccaaaccgttatcgttgaggatcctactagagga 7919
Query: 410 aacggtagatatttcctcgacgtgggtaccttcatcactgctaggaacaaggggaacggt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7918 aacggtagatatttcctcgacgtgggtaccttcatcactgctaggaacaaggggaacggt 7859
Query: 470 ttgaataacattgacgccagattcattgacgttgattctggtttgtacgttgatatcacc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7858 ttgaataacattgacgccagattcattgacgttgattctggtttgtacgttgatatcacc 7799
Query: 530 ggtctttctgtatcttatgaaccaattgccgatagattcgaatggttagtccacaaatat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7798 ggtctttctgtatcttatgaaccaattgccgatagattcgaatggttagtccacaaatat 7739
Query: 590 tttaatgatttgaaaactgacccagaacatatgccattctacgaggaccctaacgttgtt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7738 tttaatgatttgaaaactgacccagaacatatgccattctacgaggaccctaacgttgtt 7679
Query: 650 cctaacgtctcagggctcagcgttctggatagattgaagtatgaattggcattaaataag 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7678 cctaacgtctcagggctcagcgttctggatagattgaagtatgaattggcattaaataag 7619
Query: 710 accgaaggacaattgacaagagcaaggcatgagtatttgtctcngaacatcaaagaaaga 769
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7618 accgaaggacaattgacaagagcaaggcatgagtatttgtctcgaaacatcaaagaaaga 7559
Query: 770 gataagaaagaactttatcaatcagattcgttaaaggataggtacaacatttattaacat 829
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 7558 gataagaaagaactttatcaatcagattcgttaaaggataggtacaacattaataaacat 7499
Query: 830 gctcaagcttacaattgtagaaataagcattttcaaactctattcgaactatcttcacta 889
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 7498 gctcaagcttacaattgtagaaataagcatttccaaactctattcgaactatctccacta 7439
Query: 890 aggttaacttttttccatggggttccagcatatgtaccaaacttgttcctcaaggattta 949
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 7438 aggttaacttttttccatggtgttccagcatatgtaccaaacttggtcctcaaggattta 7379
Query: 950 attgcanagta 960
| |||| ||||
Sbjct: 7378 aatgcagagta 7368
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6396
Number of Sequences: 1807
Number of extensions: 6396
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)