BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC18ZD07FM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig975                                                         1622   0.0  

>3x_Contig975 
          Length = 5628

 Score = 1622 bits (818), Expect = 0.0
 Identities = 857/866 (98%), Gaps = 3/866 (0%)
 Strand = Plus / Minus

                                                                        
Query: 92   taatgaaaaatggcatcaactgtccgtgtcttagcttgcatttttatttagcacttgctt 151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3970 taatgaaaaatggcatcaactgtccgtgtcttagcttgcatttttatttagcacttgctt 3911

                                                                        
Query: 152  ccaataaacgccattacactgggaaagtttggcttcggggctcaaagtatgaaacacgct 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3910 ccaataaacgccattacactgggaaagtttggcttcggggctcaaagtatgaaacacgct 3851

                                                                        
Query: 212  atattatctctagttccttctcattcattgcgtgcaaggaattcaccacagggaaagata 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3850 atattatctctagttccttctcattcattgcgtgcaaggaattcaccacagggaaagata 3791

                                                                        
Query: 272  aatttcccggaaattgttatctattaggagatcattgtaattatatagcacggacattag 331
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3790 aatt-cccggaaattgttatctattaggagatcattgtaattatatagcacggacattag 3732

                                                                        
Query: 332  aagtatcgaggtatggatatcagaaaattgcagggtgagttgaaagacgatagtatttac 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3731 aagtatcgaggtatggatatcagaaaattgcagggtgagttgaaagacgatagtatttac 3672

                                                                        
Query: 392  acgtttgccgcgtggtgaaatctgcacgtttaccttaactccatactgaacccgttcatg 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3671 acgtttgccgcgtggtgaaatctgcacgtttaccttaactccatactgaacccgttcatg 3612

                                                                        
Query: 452  aatagaaaaaaaaaaagtactgataggaacttgaaagctctgtcctttattgattcgtta 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3611 aatagaaaaaaaaaaagtactgataggaacttgaaagctctgtcctttattgattcgtta 3552

                                                                        
Query: 512  aagttctaatcttcccgacattcataaattcaggaattcagctgtcaagaacattatatt 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3551 aagttctaatcttcccgacattcataaattcaggaattcagctgtcaagaacattatatt 3492

                                                                        
Query: 572  tcagccgaagagtatgtattgcaatgaattgaattaattgtaaagtgcataacataatgg 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3491 tcagccgaagagtatgtattgcaatgaattgaattaattgtaaagtgcataacataatgg 3432

                                                                        
Query: 632  tcctttcaccttcaacatgggaaatatatagagcggaaagaacaagacacttccaatgca 691
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3431 tcctttcaccttcaacatgggaaatatatagagcggaaagaacaagacacttccaatgca 3372

                                                                        
Query: 692  tgcgttaatagagtacttactgcatgtttttctcgttcgttacgtcttttgccgcggttt 751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3371 tgcgttaatagagtacttactgcatgtttttctcgttcgttacgtcttttgccgcggttt 3312

                                                                        
Query: 752  cgcatatatgctacgtagatttcttttaaacctcgcgagtcaatttccatt-aaatgatg 810
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3311 cgcatatatgctacgtagatttcttttaaacctcgcgagtcaatttccattaaaatgatg 3252

                                                                        
Query: 811  agacggtactgacagcagaatgtcactagactaatcagtgatcgcatgctgtgtttaaat 870
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3251 agacggtactgacagcagaatgtcactagactaatcagtgatcgcatgctgtgtttaaat 3192

                                                                        
Query: 871  ccgtgaatttgataagtattggcggaataacaagttgaggaagtggtaaagtttactttg 930
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct: 3191 ccgtgaatttgataagtattggcggaataacaagttgaggaagtggtagagtttac-tcg 3133

                                      
Query: 931  gcctctctcttttttgccatttgcat 956
             ||||||||| || ||||| ||||||
Sbjct: 3132 ccctctctctcttctgccacttgcat 3107


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,590
Number of Sequences: 1807
Number of extensions: 11590
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)