BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD07RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 1600 0.0
>3x_Contig1485
Length = 9830
Score = 1600 bits (807), Expect = 0.0
Identities = 860/874 (98%), Gaps = 3/874 (0%)
Strand = Plus / Plus
Query: 43 agcttccaaattacataaagctaattgttctagaaaagcttttacattttcttgaagagt 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8455 agcttccaaattacataaagctaacaattctagaaaagcttttacattttcttgaagagt 8514
Query: 103 ctcaactaattggtgacatgtgcgtttaccatattgtcgattggctccagcaaaatttat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8515 ctcaactaattggtgacatgtgcgtttaccatattgtcgattggctccagcaaaatttat 8574
Query: 163 ctgagattatcgaaaatcctggtccgttactaacaaaagaacgcattgaaatcacttcta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8575 ctgagattatcgaaaatcctggtccgttactaacaaaagaacgcattgaaatcacttcta 8634
Query: 223 ataatttgatcaaaagcactaataaaaaaagaagattcaatgccagaacctctaaattgt 282
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8635 ataatttgatcaaaagcactaataaaaaaagaagattcaatgccagagcctctaaattgt 8694
Query: 283 cgaatcaagaggttt-cagagttggaagatgaatatagaaagaggcagaaaagtaatgaa 341
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8695 cgaatcaagaggttttcagagttggaagatgaatatagaaagaggcagaaaagtaatgaa 8754
Query: 342 ttccatactatgagggaacagcgctcaaagctaccggcttggaaaatacagaattctatc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8755 ttccatactatgagggaacagcgctcaaagctaccggcttggaaaatacagaattctatc 8814
Query: 402 gtagagcttataaattctaatgatgttgttcttattacaggtgaaactggttcgggtaaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8815 gtagagcttataaattctaatgatgttgttcttattacaggtgaaactggttcgggtaaa 8874
Query: 462 tcaacacaggtcgttcaatttgtccttgataatttaatgcaacatggcgatttgaacaag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8875 tcaacacaggtcgttcaatttgtccttgataatttaatgcaacatggcgatttgaacaag 8934
Query: 522 acgtccataatctgcacacagccaagaaggatatctgcaattggtctagcggagcgtgta 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8935 acgtccataatctgcacacagccaagaaggatatctgcaattggtctagcggagcgtgta 8994
Query: 582 tcacaggaacggtgtgtcaaatgtggtgatgaagtagggtatattattagaggtgttaat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8995 tcacaggaacggtgtgtcaaatgtggtgatgaagtagggtatattattagaggtgttaat 9054
Query: 642 ctgacaaaaagtgctaccagaattaaattcatgacaactggtgttcttgttcgtattcta 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9055 ctgacaaaaagtgctaccagaattaaattcatgacaactggtgttcttgttcgtattcta 9114
Query: 702 caaggagatgtcactttcttgaatgactgcgtggttgttatcgatgaagttcacgaaagg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9115 caaggagatgtcactttcttgaatgactgcgtggttgttatcgatgaagttcacgaaagg 9174
Query: 762 tccatagatacagattttataattatcctattgaagaaattattgaagaaagtcaaagga 821
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9175 tccatagatacagatttaataattatcctattgaagaatttattgaagaaagtcaaagg- 9233
Query: 822 aatgaaattaattcttatgagtgccactgntaatgttgatgttttcaaggcgttctttct 881
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 9234 aatgaaattaattcttatgagtgccactgtaaatgttgatgttttcaaggcgttc-ttca 9292
Query: 882 aaaatttaaatccaattcacattgaaggacgtac 915
|||||||||| ||||||||||||||||||||||
Sbjct: 9293 aaaatttaaaatcaattcacattgaaggacgtac 9326
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8199
Number of Sequences: 1807
Number of extensions: 8199
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)