BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD08RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1507 0.0
>3x_Contig1645
Length = 12736
Score = 1507 bits (760), Expect = 0.0
Identities = 822/838 (98%), Gaps = 4/838 (0%)
Strand = Plus / Plus
Query: 67 aacttcgcattctctactctcaagttttctatctcttccaggagagattcattggatctt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11681 aacttcgcattctctactctcaagttttctatctcttccaggagagattcattggatctt 11740
Query: 127 tccgtttctgtcatatctccgtacggtctctagtacagttctgctggacttcgaaattta 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11741 tccgtttctgtcatatctccgtacggtctctagtacagttctgctggacttcgaaattta 11800
Query: 187 gacaagtgttgcaggcatcatattgttttgtataatcagtgctcgttaaaaggatgcctt 246
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11801 gacaagtgttgcaggcatcatattggcaggtataatcagtgctcgttaaaaggatgcctt 11860
Query: 247 cgtgtgattttttaatttgatttttcttttcttttgtaaatcatagtgtcagtttatgta 306
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11861 cgtgtgaacttg-aatttgatttttcttttcttttgtaaatcatagtgtcagtttatgta 11919
Query: 307 atggtaagagctgcattgactttttaactcaaacacacggaaaagcaacccactagccgc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11920 atggtaagagctgcattgactttttaactcaaacacacggaaaagcaacccactagccgc 11979
Query: 367 caagtttgatcatttaagcccaatagtatttacctttcaaaatatctcatgcgacaggtc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11980 caagtttgatcatttaagcccaatagtatttacctttcaaaatatctcatgcgacaggtc 12039
Query: 427 attatgatgtttatgaataagtgtgtaattatctatttacgtctgtttctgcttaataaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12040 attatgatgtttatgaataagtgtgtaattatctatttacgtctgtttctgcttaataaa 12099
Query: 487 taaagtttttaagtagcgaagttgaaagaaacaggtaacaacgagcacaacagttaacag 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12100 taaagtttttaagtagcgaagttgaaagaaacaggtaacaacgagcacaacagttaacag 12159
Query: 547 aattgaccaatatgttacactttcattagtcacctcagtcatttcacgaaacacagcttc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12160 aattgaccaatatgttacactttcattagtcacctcagtcatttcacgaaacacagcttc 12219
Query: 607 tttctttttgatgtcatcttgttcgttctttatactcaatagcctttcattcaattgata 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12220 tttctttttgatgtcatcttgttcgttctttatactcaatagcctttcattcaattgata 12279
Query: 667 tattctgtctttaagagacaccattgcagagtttctcctactttgcaatgaaattgcact 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12280 tattctgtctttaagagacaccattgcagagtttctcctactttgcaatgaaattgcact 12339
Query: 727 accgatatctatcgcatggtatagcttgatacgtctggtactatcagggtagtatggttc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12340 accgatatctatcgcatggtatagcttgatacgtctggtactatcagggtagtatggttc 12399
Query: 787 taaaacaaatttatgctctnctttttctactgcactgaatgaaaaa-gtccttgtggcac 845
|||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 12400 taaacaaattttatgctctcctttttctactgcactgaatgaaaaaggtccttgtggcac 12459
Query: 846 cgctttctga-ccaaga-acgatggttgttatcanatgtttcatcaattgttattgat 901
|||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 12460 cgctttctgagccaagacacgatggttgttatcaaatgtttcatcaattgttattgat 12517
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7720
Number of Sequences: 1807
Number of extensions: 7720
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)