BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD09RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig524 920 0.0
>3x_Contig524
Length = 2067
Score = 920 bits (464), Expect = 0.0
Identities = 512/526 (97%), Gaps = 2/526 (0%)
Strand = Plus / Plus
Query: 428 ttagatagtcaattgtcaattctataactaaaaaggatccttttcaactgaattcttttt 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagatagtcaattgtcaattctataactaaaaaggatccttttcaactgaattcttttt 60
Query: 488 tataatttcttgaatttgatattattttttcactgaaaaaaaataaaaactcgttctttg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tataatttcttgaatttgatattattttttcactgaaaaaaaataaaaactcgttctttg 120
Query: 548 acctattcaacaaatagacgttagcctcagggaaccgctaattgagtgggattggatgag 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acctattcaacaaatagacgttagcctcagggaaccgctaattgagtgggattggatgag 180
Query: 608 aatctgtagtaagatttataaaacctttaagaaattataaagtaagattaaacaagtatt 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatctgtagtaagatttataaaacctttaagaaattataaagtaagattaaacaagtatt 240
Query: 668 gaattacagatccataaagtataaaaaatgaaacacaaaacagaagattatacaatgaat 727
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 gaattacagatccataaagtataaaaaatgaaacacaaaacagaagataatacaatgaat 300
Query: 728 aaaggaataacgactcttaagaactaacaacttccctggtgctgaaatgaccctcttata 787
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaggaataacgactctaaagaactaacaacttccctggtgctgaaatgaccctcttata 360
Query: 788 tttctttatatattggntgaaatcanaatcctttanaggaatatatatgcgctgcataag 847
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 361 tttctttatatattgg-tgaaatcaaaatcctttaaaggaatatatatgcgctgcataag 419
Query: 848 cttttttttatttcgttcgactgtactggtcgagcgattcgcgggttgctataccgttgt 907
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 420 cttttttttattcgtttcgactgtacgggtcgagcgattcgcgggttgctataccgttgt 479
Query: 908 atttatcttatagat-tgctaccgcatatttagtgcgccatcacaa 952
|||||||| |||||| ||||| |||||| | |||||||||||||||
Sbjct: 480 atttatctcatagatatgctagcgcatagtaagtgcgccatcacaa 525
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,829
Number of Sequences: 1807
Number of extensions: 10829
Number of successful extensions: 113
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)