BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD11RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1472 1665 0.0
>3x_Contig1472
Length = 10822
Score = 1665 bits (840), Expect = 0.0
Identities = 872/880 (99%), Gaps = 2/880 (0%)
Strand = Plus / Plus
Query: 49 taaatttcagtttcaacaagtggcgccaatcccaaagagtaaatcctgtcacatgtcacg 108
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 273 taaatttcagtttcaacatttt-cgccaatcccaaagagtaaatcctgtcacatgtcacg 331
Query: 109 aaagtatgtggtattgaaatctttagttagggtggagtatggttagatctacagacatct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaagtatgtggtattgaaatctttagttagggtggagtatggttagatctacagacatct 391
Query: 169 ctatgtagttatatacatattctatgacaataggaaggctccggaaccttcattcattgc 228
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 392 ctatgtagttatatacatattctatgacaataggaaggctccggaaccttcagtcattgc 451
Query: 229 ttgtgcaatacgatctttgagtaccagtttatcagagtattttggtagtttcaagtaatt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttgtgcaatacgatctttgagtaccagtttatcagagtattttggtagtttcaagtaatt 511
Query: 289 ggcgcatgtcataacgctaggtaggcaatggtctgccgagatgttcccatctgggtgctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggcgcatgtcataacgctaggtaggcaatggtctgccgagatgttcccatctgggtgctt 571
Query: 349 caggactactgtgaatttgggttttaagtttttgaaaccgccaagaggtagtttcggaga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 caggactactgtgaatttgggttttaagtttttgaaaccgccaagaggtagtttcggaga 631
Query: 409 gccagtgatgaattgtaagaacaaacgtttctgttgtgtcgaaaaattcgacaaaatatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gccagtgatgaattgtaagaacaaacgtttctgttgtgtcgaaaaattcgacaaaatatc 691
Query: 469 tatgaggtctgttatgattggagaatccatcgagtagccatggtctgcatgaatggatga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tatgaggtctgttatgattggagaatccatcgagtagccatggtctgcatgaatggatga 751
Query: 529 gtatagcgtttgcacagaccaatcttcagcaactgcaccaaacaaatcggatagttctgt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gtatagcgtttgcacagaccaatcttcagcaactgcaccaaacaaatcggatagttctgt 811
Query: 589 cggagttaagattagcaatgatgaataagggaatgatttcgaaaatccgttcctgaaggc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 cggagttaagattagcaatgatgaataagggaatgatttcgaaaatccgttcctgaaggc 871
Query: 649 agcgagctgcatatctacgcctttgcccaaaaattggtcaaagacacgaatcaagtactc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 agcgagctgcatatctacgcctttgcccaaaaattggtcaaagacacgaatcaagtactc 931
Query: 709 ttccacgttgaaagattcaactaagattttcgaaccaccttccaacaattctatatcata 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 ttccacgttgaaagattcaactaagattttcgaaccaccttccaacaattctatatcata 991
Query: 769 accaggcagcatgaaatataggtcaaggtttttgatagagtcatcatgacgattatcata 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 accaggcagcatgaaatataggtcaaggtttttgatagagtcatcatgacgattatcata 1051
Query: 829 caaaaatgcgagtgattttcctagttg-acatcaaactgtcctacgaggtggatacaagt 887
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1052 caaaaatgcgagtgattttcctagttgaacatcaaactgtcctacgaggtggatacaagt 1111
Query: 888 ttcgaagtcttcttagtcaagtcgatcattcttgcagcat 927
||||||||||||| |||||||||||||||||||||||||
Sbjct: 1112 ttcgaagtcttctaggtcaagtcgatcattcttgcagcat 1151
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6006
Number of Sequences: 1807
Number of extensions: 6006
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)