BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZD12FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1501 0.0
3x_Contig555 589 e-168
>3x_Contig1663
Length = 13533
Score = 1501 bits (757), Expect = 0.0
Identities = 849/874 (97%), Gaps = 6/874 (0%)
Strand = Plus / Plus
Query: 84 tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11869 tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 11928
Query: 144 tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11929 tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 11988
Query: 204 tacattggatatcttttattaaaccgattcgatatgaagtgctatcaccatgtatttctc 263
||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11989 tacattggatacgta--atcaaaccgattcgatatgaagtgctatcaccatgtgtttctc 12046
Query: 264 aagtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttca 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12047 aagtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttca 12106
Query: 324 ctttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12107 ctttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaa 12166
Query: 384 aaaaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167 aaaaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatc 12226
Query: 444 tcttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12227 tcttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttg 12286
Query: 504 ttgcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12287 ttgcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatg 12346
Query: 564 tctgctgaagttcctactttcaagctagttctagtcggtgatggtggtatcggtaagaca 623
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 12347 tctgctgaagttcctactttcaagctagttctagtcggtgatggtggtaccggtaagaca 12406
Query: 624 actttcgtcaagagacatttgactggtgaattcgagaagaagtacattgctaccatcggt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12407 actttcgtcaagagacatttgactggtgaattcgagaagaagtacattgctaccatcggt 12466
Query: 684 gttgaagtgcatcctttggctntttacaccaactttggtgaaatcaaattcgatgtctgg 743
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 12467 gttgaagtgcatcctttggctttttacaccaactttggtgaaatcaaattcgatgtctgg 12526
Query: 744 gataccgcaggtcaagaaaaattcngtggtctaagagatggtta-tatatcaatgctcaa 802
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 12527 gataccgcaggtcaagaaaaattcggtggtctaagagatggttattatatcaatgctcaa 12586
Query: 803 tgtggtatcattatgtttgatgtgactttccaaaatcacctacaagaacgtttccaactg 862
|||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||
Sbjct: 12587 tgtggtatcattatgtttgatgtgac-ttccagaatcacctacaagaacgttccaaactg 12645
Query: 863 gcacagagatttggttcgtgtttgtgaaaacaattccaatcg-tttgtgtggtaacaggt 921
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct: 12646 gcacagagatttggttcgtgtttgtgaaaac-attccaatcgttttgtgtggtaacaagg 12704
Query: 922 tcgatgttcaggaaaagaaaatttaggccaagac 955
||||||| |||||| ||| || ||||||||||
Sbjct: 12705 tcgatgtcaaggaaagaaaagttaaggccaagac 12738
>3x_Contig555
Length = 1912
Score = 589 bits (297), Expect = e-168
Identities = 365/383 (95%), Gaps = 4/383 (1%)
Strand = Plus / Minus
Query: 575 tcctactttcaagctagttctagtcggtgatggtggtatcggtaagacaactttcgtcaa 634
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1908 tcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaactttcgtcaa 1849
Query: 635 gagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgttgaagtgca 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1848 gagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgttgaagtgca 1789
Query: 695 tcctttggctntttacaccaactttggtgaaatcaaattcgatgtctgggataccgcagg 754
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1788 tcctttggctttttacaccaactttggtgaaatcaaattcgatgtctgggataccgcagg 1729
Query: 755 tcaagaaaaattcngtggtctaagagatggtta-tatatcaatgctcaatgtggtatcat 813
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1728 tcaagaaaaattcggtggtctaagagatggttattatatcaatgctcaatgtggtatcat 1669
Query: 814 tatgtttgatgtgactttccaaaatcacctacaagaacgtttccaactggcacagagatt 873
||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct: 1668 tatgtttgatgtgac-ttccagaatcacctacaagaacgttccaaactggcacagagatt 1610
Query: 874 tggttcgtgtttgtgaaaacaattccaatcg-tttgtgtggtaacaggttcgatgttcag 932
|||||||||||||||||||| |||||||||| |||||||||||||| | ||||||| ||
Sbjct: 1609 tggttcgtgtttgtgaaaac-attccaatcgttttgtgtggtaacaaggtcgatgtcaag 1551
Query: 933 gaaaagaaaatttaggccaagac 955
|||| ||| || ||||||||||
Sbjct: 1550 gaaagaaaagttaaggccaagac 1528
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,348
Number of Sequences: 1807
Number of extensions: 16348
Number of successful extensions: 452
Number of sequences better than 1.0e-20: 2
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)