BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZE01FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig772 1302 0.0
>3x_Contig772
Length = 2243
Score = 1302 bits (657), Expect = 0.0
Identities = 765/786 (97%), Gaps = 12/786 (1%)
Strand = Plus / Minus
Query: 88 acacttttcatcgctcgacaagaagacaaaagaaaaagtgtcatcagatgtcaggaacat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 acacttttcatcgctcgacaagaagacaaaagaaaaagtgtcatcagatgtcaggaacat 823
Query: 148 tggatgctgaggaaaagaaactgaacgagggaaggttggaaattttcgaaatgcgatgtt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tggatgctgaggaaaagaaactgaacgagggaaggttggaaattttcgaaatgcgatgtt 763
Query: 208 gaattgtgcggttatacaatatatttgactcacgtgatgggtatttaaaatccgggtaaa 267
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattgtgcgggta-acaatatatttgactcacgtgatgggtatttaaaatccgggtaaa 704
Query: 268 tgatatctgactgagttttaggtcgtccaaaaaaagagcttttgaggccccagaaacaat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgatatctgactgagttttaggtcgtccaaaaaaagagcttttgaggccccagaaacaat 644
Query: 328 aatttgttttccattttgaaaaacgtaaacaataagagtatctttacatttgatatattt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aatttgttttccattttgaaaaacgtaaacaataagagtatctttacatttgatatattt 584
Query: 388 actggaggaaggcatgcattgttctacacattcgaatagatttatatttaccttggagct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 actggaggaaggcatgcattgttctacacattcgaatagatttatatttaccttggagct 524
Query: 448 ttaaatagtatctacttcttgctaggctaagtgatactgaatcgtgatttaattacgcag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttaaatagtatctacttcttgctaggctaagtgatactgaatcgtgatttaattacgcag 464
Query: 508 tactgtattattcattgaagaagtgggaaatcaatcatcatgtccagaatcaacaaagat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tactgtattattcattgaagaagtgggaaatcaatcatcatgtccagaatcaacaaagat 404
Query: 568 atttttacgctatttgacaagcaagccaagggatccatcagtaaggcccaagttggtgat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atttttacgctatttgacaagcaagccaagggatccatcagtaaggcccaagttggtgat 344
Query: 628 tatntgagagcaattggatacaatcctaccaatgcgctagtggaggaagttgtcgctttc 687
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tatttgagagcaattggatacaatcctaccaatgcgctagtggaggaagttgtcgcttct 284
Query: 688 ttaggtgacgagttgaccttangtgatctag-aaaattagttaaggataacgaagagaag 746
| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 283 tcaggtgacgagttgaccttaggtgatctagaaaaattagttaaggataacgaagagaag 224
Query: 747 ttggagcanacttactcaa-gtaaagtagatgattt-atcaaagcctttc-agtttttga 803
|||||||| || ||||||| |||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 223 ttggagcaaac-tactcaaggtaaagtagaggatttcatcaaagcctttcaagtttttga 165
Query: 804 caaggat-atactggcaa-gtatcacca-gtgatatttg-taccta-tgaccggt-tagg 857
||||||| |||||||||| ||||||||| |||||||| | |||||| |||||||| ||||
Sbjct: 164 caaggataatactggcaaggtatcaccaggtgatattcgttacctattgaccggtctagg 105
Query: 858 ggaaag 863
||||||
Sbjct: 104 ggaaag 99
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7228
Number of Sequences: 1807
Number of extensions: 7228
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)