BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC18ZE01RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig524 1594 0.0
>3x_Contig524
Length = 2067
Score = 1594 bits (804), Expect = 0.0
Identities = 851/868 (98%)
Strand = Plus / Plus
Query: 47 ttttttattcgtttcgactgtacgggtcgagcgattcgcgggttgctataccgttgtatt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttttttattcgtttcgactgtacgggtcgagcgattcgcgggttgctataccgttgtatt 482
Query: 107 tatctcatagatatgctagcgcatagtaagtgcgccatcacaaatctgctgaaaaaacct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tatctcatagatatgctagcgcatagtaagtgcgccatcacaaatctgctgaaaaaacct 542
Query: 167 gttttggcgacgggagaatacgacatagcagatgagattgatggaggcgatgaggtgtat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gttttggcgacgggagaatacgacatagcagatgagattgatggaggcgatgaggtgtat 602
Query: 227 aggtgttcaaacgacggaaaagggtgggggcacgtgatgcgtgggaatgatgcggacatt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aggtgttcaaacgacggaaaagggtgggggcacgtgatgcgtgggaatgatgcggacatt 662
Query: 287 gtcaatttttctgttattccggtgtgatacctaaataatccgggtaacgtaaagcgctga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gtcaatttttctgttattccggtgtgatacctaaataatccgggtaacgtaaagcgctga 722
Query: 347 cagatgtcagcgccttagaatgttgttagatggtattattgtgtatatcatcattgaacg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cagatgtcagcgccttagaatgttgttagatggtattattgtgtatatcatcattgaacg 782
Query: 407 acagaggtataaggttcgtcagttgctgagtaacgctgaaatttcaatggatacggcgtc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 acagaggtataaggttcgtcagttgctgagtaacgctgaaatttcaatggatacggcgtc 842
Query: 467 accacttttactgtgggcagaacagttatgtcttcgggtacccttgacccaattgttctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 accacttttactgtgggcagaacagttatgtcttcgggtacccttgacccaattgttctt 902
Query: 527 cctggcggttgttgggcacttgctagtgttaaccgtactttgtttctccccatggttgtc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 cctggcggttgttgggcacttgctagtgttaaccgtactttgtttctccccatggttgtc 962
Query: 587 gtgtatagaataccgcattcgtaattggtaggtttttttagtgggctgggaccccatgca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 gtgtatagaataccgcattcgtaattggtaggtttttttagtgggctgggaccccatgca 1022
Query: 647 gcttgggaaaggttatgactggtgagtagtatccaatctggtcgcttgagtgtattttca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 gcttgggaaaggttatgactggtgagtagtatccaatctggtcgcttgagtgtattttca 1082
Query: 707 tctgngaattgtatatattatntggtatggcttggaaccatatgcctattcttatcggac 766
|||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 tctgtgaattgtatataatatttggtatggcttggaaccatatgcctattcttatcggac 1142
Query: 767 tgtgtcgcgtttgttggcagagggacatgttttctttaacaaggcactacttttctttca 826
|||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||
Sbjct: 1143 tgtgtcgcgtttgttggcagagggacatgttttcttaaacaaggcactactttcctctca 1202
Query: 827 antggttttgatcttttgntaaaaaaccaatttgcccttagcccctgggtcatacacttt 886
| ||| |||||||||| ||||||||||||||| ||||||||||| |||||||||| |
Sbjct: 1203 gtttgttctgatcttttgtaaaaaaaccaatttgcacttagcccctgtgtcatacactct 1262
Query: 887 ttgatctcggttttaataggccttacca 914
||||||||||||||| |||||| |||||
Sbjct: 1263 ttgatctcggttttagtaggccatacca 1290
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4740
Number of Sequences: 1807
Number of extensions: 4740
Number of successful extensions: 22
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)